{ "type": "genome", "identifier": "GCA_011620885.1", "organism": "Methanocorpusculaceae archaeon", "title": "Methanocorpusculaceae archaeon", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCA_011620885.1", "bioproject": "PRJNA592873", "biosample": "SAMN13475793", "wgs_master": "WOYK00000000.1", "refseq_category": "na", "taxid": "2682607", "species_taxid": "2682607", "organism_name": "Methanocorpusculaceae archaeon", "infraspecific_name": "", "isolate": "WOFA02", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/23", "asm_name": "ASM1162088v1", "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/620/885/GCA_011620885.1_ASM1162088v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-23", "dateModified": "2020-03-23", "datePublished": "2020-03-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Methanocorpusculaceae archaeon" ], "sample_taxid": [ "2682607" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Wietze" ], "sample_host_location_id": [], "data_size": "0.531 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanocalculus alkaliphilus", "strain": "strain=AMF2", "accession": "GCA_024170505.1", "taxid": 768730, "species_taxid": 768730, "relation_to_type": "type", "validated": true, "ani": 78.4915, "matched_fragments": 280, "total_fragments": 596, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_013329165.1", "gtdb_species": "s__Methanocalculus sp9912u", "ani": 98.6577, "matched_fragments": 517, "total_fragments": 596, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanocorpusculaceae;g__Methanocalculus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.13", "min_intra_species_ani": "98.71", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.82", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_002496395.1", "gtdb_species": "s__Methanocalculus sp002496395", "ani": 87.8566, "matched_fragments": 518, "total_fragments": 596, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanocorpusculaceae;g__Methanocalculus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003838185.1", "gtdb_species": "s__Methanocalculus sp003838185", "ani": 78.8873, "matched_fragments": 283, "total_fragments": 596, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanocorpusculaceae;g__Methanocalculus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.84", "min_intra_species_ani": "99.82", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": 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{ "phenotypes": null, "cell_diameter": -0.1, "cell_length": -0.1, "doubling_h": 0.964, "growth_tmp": 35.05, "optimum_tmp": 35.25, "optimum_ph": 7.037, "genome_size": 1740292.2, "gc_content": 50.715, "coding_genes": 1773.333, "rRNA16S_genes": 3.0, "tRNA_genes": 50.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.75, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Archaea", "p__Halobacteriota", "c__Methanomicrobia", "o__Methanomicrobiales", "f__Methanocorpusculaceae", "g__Methanocalculus", "s__Methanocalculus sp9912u" ], "_genome_taxon": [ "Methanocorpusculaceae", "archaeon", "d__Archaea", "p__Halobacteriota", "c__Methanomicrobia", "o__Methanomicrobiales", "f__Methanocorpusculaceae", "g__Methanocalculus", "s__Methanocalculus sp9912u", "Archaea", "Halobacteriota", "Methanomicrobia", "Methanomicrobiales", "Methanocorpusculaceae", "Methanocalculus", "Methanocalculus", "sp9912u" ], "_meo": [ { "id": "MEO_0000007", "label": "soil" }, { "id": "MEO_0001474", "label": "oil associated feature" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }