{
    "type": "genome",
    "identifier": "GCA_011772375.1",
    "organism": "Gemmatimonadales bacterium",
    "title": "Gemmatimonadales bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Maharaja Krishnakumarsinhji Bhavnagar University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_011772375.1",
        "bioproject": "PRJNA598413",
        "biosample": "SAMN13684450",
        "wgs_master": "WVZQ00000000.1",
        "refseq_category": "na",
        "taxid": "2448054",
        "species_taxid": "2448054",
        "organism_name": "Gemmatimonadales bacterium",
        "infraspecific_name": "",
        "isolate": "CS4-C031",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/03/30",
        "asm_name": "ASM1177237v1",
        "submitter": "Maharaja Krishnakumarsinhji Bhavnagar University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/772/375/GCA_011772375.1_ASM1177237v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-03-30",
    "dateModified": "2020-03-30",
    "datePublished": "2020-03-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gemmatimonadales bacterium"
        ],
        "sample_taxid": [
            "2448054"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "India: Gulf of Khambhat"
        ],
        "sample_host_location_id": [],
        "data_size": "1.635 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 75.0,
        "contamination": 8.8,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "5768264",
        "Number of Sequences": "723",
        "Longest Sequences (bp)": "157390",
        "N50 (bp)": "32750",
        "Gap Ratio (%)": "0.805563",
        "GCcontent (%)": "64.1",
        "Number of CDSs": "4677",
        "Average Protein Length": "312.1",
        "Coding Ratio (%)": "75.9",
        "Number of rRNAs": "3",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Gemmatirosa kalamazoonensis",
                "strain": "strain=KBS708",
                "accession": "GCA_000522985.1",
                "taxid": 861299,
                "species_taxid": 861299,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5126,
                "matched_fragments": 86,
                "total_fragments": 1554,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thioalbus denitrificans",
                "strain": "strain=DSM 26407",
                "accession": "GCA_003337735.1",
                "taxid": 547122,
                "species_taxid": 547122,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3766,
                "matched_fragments": 51,
                "total_fragments": 1554,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Amycolatopsis tolypomycina",
                "strain": "strain=DSM 44544",
                "accession": "GCA_900105945.1",
                "taxid": 208445,
                "species_taxid": 208445,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.622,
                "matched_fragments": 78,
                "total_fragments": 1554,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 75.0,
            "contamination": 8.8,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_011772755.1",
                "gtdb_species": "s__WVYX01 sp011772755",
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                "matched_fragments": 1084,
                "total_fragments": 1554,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__WVYX01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_016180765.1",
                "gtdb_species": "s__JACPAP01 sp016180765",
                "ani": 76.6237,
                "matched_fragments": 98,
                "total_fragments": 1554,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__JACPAP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.48",
                "min_intra_species_ani": "98.31",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_002923375.1",
                "gtdb_species": "s__HRBIN33 sp002923375",
                "ani": 76.4517,
                "matched_fragments": 66,
                "total_fragments": 1554,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__HRBIN33",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009692185.1",
                "gtdb_species": "s__SHZT01 sp009692185",
                "ani": 76.4191,
                "matched_fragments": 59,
                "total_fragments": 1554,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__SHZT01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017881505.1",
                "gtdb_species": "s__JADGQW01 sp017881505",
                "ani": 76.0865,
                "matched_fragments": 62,
                "total_fragments": 1554,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__JACORV01;g__JADGQW01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003251175.1",
                "gtdb_species": "s__SZUA-544 sp003251175",
                "ani": 76.0335,
                "matched_fragments": 54,
                "total_fragments": 1554,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__SZUA-544",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001917665.1",
                "gtdb_species": "s__20CM-4-69-16 sp001917665",
                "ani": 75.7781,
                "matched_fragments": 57,
                "total_fragments": 1554,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__20CM-4-69-16",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016713435.1",
                "gtdb_species": "s__JADJOM01 sp016713435",
                "ani": 75.699,
                "matched_fragments": 96,
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                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__JADJOM01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016880225.1",
                "gtdb_species": "s__AG41 sp016880225",
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                "matched_fragments": 51,
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                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__AG41",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003220975.1",
                "gtdb_species": "s__AG41 sp003220975",
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                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__AG41",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_016719105.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__SCN-70-22",
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                "num_clustered_genomes": 8,
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            },
            {
                "accession": "GCA_013361935.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__JABFXC01",
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                "mean_intra_species_ani": "99.88",
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                "num_clustered_genomes": 3,
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            },
            {
                "accession": "GCA_016872875.1",
                "gtdb_species": "s__DSUN01 sp016872875",
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                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__PUPC01;o__DSUN01;f__DSUN01;g__DSUN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.155,
        "cell_length": null,
        "doubling_h": 1.079,
        "growth_tmp": 30.0,
        "optimum_tmp": 27.5,
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        "coding_genes": 4635.5,
        "rRNA16S_genes": 1.666,
        "tRNA_genes": 48.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": 1.0,
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        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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    "_gtdb_taxon": [
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        "p__Gemmatimonadota",
        "c__Gemmatimonadetes",
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        "f__GWC2-71-9",
        "g__WVYX01",
        "s__WVYX01 sp011772755"
    ],
    "_genome_taxon": [
        "Gemmatimonadales",
        "bacterium",
        "d__Bacteria",
        "p__Gemmatimonadota",
        "c__Gemmatimonadetes",
        "o__Gemmatimonadales",
        "f__GWC2-71-9",
        "g__WVYX01",
        "s__WVYX01 sp011772755",
        "Bacteria",
        "Gemmatimonadota",
        "Gemmatimonadetes",
        "Gemmatimonadales",
        "GWC2-71-9",
        "WVYX01",
        "WVYX01",
        "sp011772755"
    ],
    "_meo": [
        {
            "id": "MEO_0000040",
            "label": "marine sediment"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}