{ "type": "genome", "identifier": "GCA_011772795.1", "organism": "Planctomycetales bacterium", "title": "Planctomycetales bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Maharaja Krishnakumarsinhji Bhavnagar University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_011772795.1", "bioproject": "PRJNA598413", "biosample": "SAMN13684430", "wgs_master": "WVYW00000000.1", "refseq_category": "na", "taxid": "2053591", "species_taxid": "2053591", "organism_name": "Planctomycetales bacterium", "infraspecific_name": "", "isolate": "CS3-C063", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/30", "asm_name": "ASM1177279v1", "submitter": "Maharaja Krishnakumarsinhji Bhavnagar University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/772/795/GCA_011772795.1_ASM1177279v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-30", "dateModified": "2020-03-30", "datePublished": "2020-03-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Planctomycetales bacterium" ], "sample_taxid": [ "2053591" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India: Gulf of Khambhat" ], "sample_host_location_id": [], "data_size": "1.201 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 6.94, "strain_heterogeneity": 66.67, "genome_count": 1 }, "data_type": "MAG", 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"total_fragments": 923, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 87.5, "contamination": 6.94, "strain_heterogeneity": 66.67 }, "gtdb_result": [ { "accession": "GCA_011772275.1", "gtdb_species": "s__CS4-C045 sp011772275", "ani": 99.8994, "matched_fragments": 842, "total_fragments": 923, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA7805;g__CS4-C045", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCA_003389325.1", "gtdb_species": "s__LB-PLM-3 sp003389325", "ani": 75.8059, "matched_fragments": 57, "total_fragments": 923, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__PALSA-1355;g__LB-PLM-3", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003576855.1", "gtdb_species": "s__Lacipirellula sp003576855", "ani": 75.7082, "matched_fragments": 55, "total_fragments": 923, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Lacipirellulaceae;g__Lacipirellula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003153375.1", "gtdb_species": "s__PALSA-1355 sp003153375", "ani": 75.6641, "matched_fragments": 52, "total_fragments": 923, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__PALSA-1355;g__PALSA-1355", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007751035.1", "gtdb_species": "s__Lignipirellula cremea", "ani": 75.4597, "matched_fragments": 62, "total_fragments": 923, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Lignipirellula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018242585.1", "gtdb_species": "s__JAFEBQ01 sp018242585", "ani": 75.3432, "matched_fragments": 54, "total_fragments": 923, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__PNKZ01;g__JAFEBQ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.083, "cell_length": 0.139, "doubling_h": 1.117, "growth_tmp": 28.294, "optimum_tmp": 27.699, "optimum_ph": 6.091, "genome_size": 7406693.402, "gc_content": 58.084, "coding_genes": 5540.533, "rRNA16S_genes": 2.5, "tRNA_genes": 57.7, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.75, "range_salinity": 1.0, "facultative_respiration": 0.058, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.941, "mesophilic_range_tmp": 0.9, "thermophilic_range_tmp": 0.1, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.714, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.285, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Planctomycetota", "c__Planctomycetia", "o__Pirellulales", "f__UBA7805", "g__CS4-C045", "s__CS4-C045 sp011772275" ], "_genome_taxon": [ "Planctomycetales", "bacterium", "d__Bacteria", "p__Planctomycetota", "c__Planctomycetia", "o__Pirellulales", "f__UBA7805", "g__CS4-C045", "s__CS4-C045 sp011772275", "Bacteria", "Planctomycetota", "Planctomycetia", "Pirellulales", "UBA7805", "CS4-C045", "CS4-C045", "sp011772275" ], "_meo": [ { "id": "MEO_0000040", "label": "marine sediment" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }