{ "type": "genome", "identifier": "GCA_012521085.1", "organism": "Clostridiales bacterium", "title": "Clostridiales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Technical University of Denmark", "publication": [ {} ], "properties": { "assembly_accession": "GCA_012521085.1", "bioproject": "PRJNA602310", "biosample": "SAMN13894072", "wgs_master": "JAAYNB000000000.1", "refseq_category": "na", "taxid": "1898207", "species_taxid": "1898207", "organism_name": "Clostridiales bacterium", "infraspecific_name": "", "isolate": "AS21ysBPME_102", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/18", "asm_name": "ASM1252108v1", "submitter": "Technical University of Denmark", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/521/085/GCA_012521085.1_ASM1252108v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-18", "dateModified": "2020-04-18", "datePublished": "2020-04-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridiales bacterium" ], "sample_taxid": [ "1898207" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.519 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 0.38, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1876803", "Number of Sequences": "279", "Longest Sequences (bp)": "55998", "N50 (bp)": "11335", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "30.2", "Number of CDSs": "1606", "Average Protein Length": "291.6", "Coding Ratio (%)": "74.9", "Number of rRNAs": "0", "Number of tRNAs": "23", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Anaerovirgula multivorans", "strain": "strain=SCA", "accession": "GCA_900188145.1", "taxid": 312168, "species_taxid": 312168, "relation_to_type": "type", "validated": true, "ani": 76.8607, "matched_fragments": 93, "total_fragments": 467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium formicaceticum", "strain": "strain=ATCC 27076", "accession": "GCA_001854185.1", "taxid": 1497, "species_taxid": 1497, "relation_to_type": "type", "validated": true, "ani": 76.624, "matched_fragments": 97, "total_fragments": 467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium formicaceticum", "strain": "strain=DSM 92", "accession": "GCA_002080475.1", "taxid": 1497, "species_taxid": 1497, "relation_to_type": "type", "validated": true, "ani": 76.6087, "matched_fragments": 97, "total_fragments": 467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alkaliphilus flagellatus", "strain": "strain=MSJ-5", "accession": "GCA_018919215.1", "taxid": 2841507, "species_taxid": 2841507, "relation_to_type": "type", "validated": true, "ani": 76.2345, "matched_fragments": 67, "total_fragments": 467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crassaminicella profunda", "strain": "strain=Ra1766H", "accession": "GCA_019884785.1", "taxid": 1286698, "species_taxid": 1286698, "relation_to_type": "type", "validated": true, "ani": 75.7617, "matched_fragments": 63, "total_fragments": 467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Romboutsia lituseburensis", "strain": "strain=A25K", "accession": "GCA_900002825.1", "taxid": 1537, 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