{
    "type": "genome",
    "identifier": "GCA_012521795.1",
    "organism": "Syntrophomonadaceae bacterium",
    "title": "Syntrophomonadaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Technical University of Denmark",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_012521795.1",
        "bioproject": "PRJNA602310",
        "biosample": "SAMN13894034",
        "wgs_master": "JAAYLP000000000.1",
        "refseq_category": "na",
        "taxid": "2093811",
        "species_taxid": "2093811",
        "organism_name": "Syntrophomonadaceae bacterium",
        "infraspecific_name": "",
        "isolate": "AS15tlH2ME_52",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/04/18",
        "asm_name": "ASM1252179v1",
        "submitter": "Technical University of Denmark",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/521/795/GCA_012521795.1_ASM1252179v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-04-18",
    "dateModified": "2020-04-18",
    "datePublished": "2020-04-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Syntrophomonadaceae bacterium"
        ],
        "sample_taxid": [
            "2093811"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "0.678 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 94.91,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2350774",
        "Number of Sequences": "305",
        "Longest Sequences (bp)": "55066",
        "N50 (bp)": "11411",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "45.4",
        "Number of CDSs": "2090",
        "Average Protein Length": "287.2",
        "Coding Ratio (%)": "76.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 94.91,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_003444615.1",
                "gtdb_species": "s__DTU018 sp003444615",
                "ani": 99.174,
                "matched_fragments": 410,
                "total_fragments": 623,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Syntrophomonadia;o__Syntrophomonadales;f__Syntrophomonadaceae;g__DTU018",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.24",
                "min_intra_species_ani": "99.24",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002305535.1",
                "gtdb_species": "s__DTU018 sp002305535",
                "ani": 79.719,
                "matched_fragments": 278,
                "total_fragments": 623,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Syntrophomonadia;o__Syntrophomonadales;f__Syntrophomonadaceae;g__DTU018",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.96",
                "min_intra_species_ani": "98.96",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_001513155.1",
                "gtdb_species": "s__DTU018 sp001513155",
                "ani": 78.8359,
                "matched_fragments": 273,
                "total_fragments": 623,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Syntrophomonadia;o__Syntrophomonadales;f__Syntrophomonadaceae;g__DTU018",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.65",
                "min_intra_species_ani": "99.65",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.377,
        "cell_length": 0.5,
        "doubling_h": 0.522,
        "growth_tmp": 42.405,
        "optimum_tmp": 42.916,
        "optimum_ph": 7.5,
        "genome_size": 2522621.55,
        "gc_content": 50.995,
        "coding_genes": 2304.667,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 45.0,
        "gram_stain": 0.3,
        "sporulation": 0.166,
        "motility": 0.666,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.857,
        "aerobic_respiration": 0.142,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 1.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_B",
        "c__Syntrophomonadia",
        "o__Syntrophomonadales",
        "f__Syntrophomonadaceae",
        "g__DTU018",
        "s__DTU018 sp003444615"
    ],
    "_genome_taxon": [
        "Syntrophomonadaceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_B",
        "c__Syntrophomonadia",
        "o__Syntrophomonadales",
        "f__Syntrophomonadaceae",
        "g__DTU018",
        "s__DTU018 sp003444615",
        "Bacteria",
        "Bacillota",
        "B",
        "Syntrophomonadia",
        "Syntrophomonadales",
        "Syntrophomonadaceae",
        "DTU018",
        "DTU018",
        "sp003444615"
    ],
    "_meo": [
        {
            "id": "MEO_0001192",
            "label": "anaerobic digester"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}