{ "type": "genome", "identifier": "GCA_012719795.1", "organism": "Bifidobacterium crudilactis", "title": "Bifidobacterium crudilactis", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Technical University of Denmark", "publication": [ {} ], "properties": { "assembly_accession": "GCA_012719795.1", "bioproject": "PRJNA602310", "biosample": "SAMN13893546", "wgs_master": "JAAXZR000000000.1", "refseq_category": "na", "taxid": "327277", "species_taxid": "327277", "organism_name": "Bifidobacterium crudilactis", "infraspecific_name": "", "isolate": "AS01afH2WH_6", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/23", "asm_name": "ASM1271979v1", "submitter": "Technical University of Denmark", "gbrs_paired_asm": "GCF_012719795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/719/795/GCA_012719795.1_ASM1271979v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-23", "dateModified": "2020-04-23", "datePublished": "2020-04-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Bifidobacterium crudilactis" ], "sample_taxid": [ "327277" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.664 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2333275", "Number of Sequences": "28", "Longest Sequences (bp)": "232890", 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77.0908, "matched_fragments": 108, "total_fragments": 766, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium apousia", "strain": "strain=W8102", "accession": "GCA_007559275.1", "taxid": 2750996, "species_taxid": 2750996, "relation_to_type": "type", "validated": true, "ani": 77.0651, "matched_fragments": 108, "total_fragments": 766, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000738005.1", "gtdb_species": "s__Bifidobacterium crudilactis", "ani": 97.4715, "matched_fragments": 688, "total_fragments": 766, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.51", "min_intra_species_ani": "97.51", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", 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