{ "type": "genome", "identifier": "GCA_012729065.1", "organism": "Treponema sp.", "title": "Treponema sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Technical University of Denmark", "publication": [ {} ], "properties": { "assembly_accession": "GCA_012729065.1", "bioproject": "PRJNA602310", "biosample": "SAMN13893719", "wgs_master": "JAAYDV000000000.1", "refseq_category": "na", "taxid": "166", "species_taxid": "166", "organism_name": "Treponema sp.", "infraspecific_name": "", "isolate": "AS06rmzACSIP_587", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/23", "asm_name": "ASM1272906v1", "submitter": "Technical University of Denmark", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/729/065/GCA_012729065.1_ASM1272906v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-23", "dateModified": "2020-04-23", "datePublished": "2020-04-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Treponema sp." ], "sample_taxid": [ "166" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.707 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2482063", "Number of Sequences": "103", "Longest Sequences (bp)": "104057", "N50 (bp)": "38778", "Gap Ratio (%)": "0.000000", "GCcontent (%)": 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018262985.1", "gtdb_species": "s__JAFGNN01 sp018262985", "ani": 76.2321, "matched_fragments": 56, "total_fragments": 775, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__UBA12059;g__JAFGNN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.32", "min_intra_species_ani": "98.32", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.59, "cell_length": 0.834, "doubling_h": 0.49, "growth_tmp": 35.047, "optimum_tmp": 33.75, "optimum_ph": 7.183, "genome_size": 2974429.677, "gc_content": 43.752, "coding_genes": 2837.944, "rRNA16S_genes": 2.285, "tRNA_genes": 45.166, "gram_stain": 0.0, 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"\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }