{ "type": "genome", "identifier": "GCA_012799005.1", "organism": "Corynebacterium sp.", "title": "Corynebacterium sp.", "description": "derived from metagenome; fragmented assembly", "data type": "Genome sequencing and assembly", "organization": "Technical University of Denmark", "publication": [ {} ], "properties": { "assembly_accession": "GCA_012799005.1", "bioproject": "PRJNA602310", "biosample": "SAMN13894841", "wgs_master": "JAAZMC000000000.1", "refseq_category": "na", "taxid": "1720", "species_taxid": "1720", "organism_name": "Corynebacterium sp.", "infraspecific_name": "", "isolate": "AS23ysBPME_308", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/24", "asm_name": "ASM1279900v1", "submitter": "Technical University of Denmark", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/799/005/GCA_012799005.1_ASM1279900v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-24", "dateModified": "2020-04-24", "datePublished": "2020-04-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium sp." ], "sample_taxid": [ "1720" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.554 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 52.2, "contamination": 6.25, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1961593", "Number of Sequences": "586", "Longest Sequences (bp)": "11595", "N50 (bp)": "3775", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.0", "Number of CDSs": "1353", "Average Protein Length": "276.2", "Coding Ratio (%)": "57.1", "Number of rRNAs": "0", "Number of tRNAs": "33", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium gallinarum", "strain": "strain=Sa1YVA5", "accession": "GCA_014837045.1", "taxid": 2762214, "species_taxid": 2762214, "relation_to_type": "type", "validated": true, "ani": 98.6561, "matched_fragments": 316, "total_fragments": 320, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium efficiens", "strain": "strain=YS-314", "accession": "GCA_000160795.1", "taxid": 152794, "species_taxid": 152794, "relation_to_type": "type", "validated": true, "ani": 92.5126, "matched_fragments": 314, "total_fragments": 320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium efficiens", "strain": "strain=YS-314", "accession": "GCA_000011305.1", "taxid": 152794, "species_taxid": 152794, "relation_to_type": "type", "validated": true, "ani": 92.4841, "matched_fragments": 314, "total_fragments": 320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium pacaense", "strain": "strain=Marseille-P2417", "accession": "GCA_900169525.1", "taxid": 1816684, "species_taxid": 1816684, "relation_to_type": "type", "validated": true, "ani": 78.6892, "matched_fragments": 174, "total_fragments": 320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium pollutisoli", "strain": "strain=VDS11", "accession": "GCA_900177745.1", "taxid": 1610489, "species_taxid": 1610489, "relation_to_type": "type", "validated": true, "ani": 78.5921, "matched_fragments": 141, "total_fragments": 320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium halotolerans", "strain": "strain=YIM 70093 = DSM 44683", "accession": "GCA_000341345.1", "taxid": 225326, "species_taxid": 225326, "relation_to_type": "type", "validated": true, "ani": 78.5074, "matched_fragments": 147, "total_fragments": 320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium occultum", "strain": "strain=2039", "accession": "GCA_009734425.1", "taxid": 2675219, "species_taxid": 2675219, "relation_to_type": "type", "validated": true, "ani": 78.4687, "matched_fragments": 137, "total_fragments": 320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium marinum", "strain": "strain=CGMCC 1.6998", "accession": "GCA_014645275.1", "taxid": 349751, "species_taxid": 349751, "relation_to_type": "type", "validated": true, "ani": 77.9714, "matched_fragments": 139, "total_fragments": 320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium glutamicum", "strain": "strain=ATCC 13032", "accession": "GCA_011761195.1", "taxid": 1718, "species_taxid": 1718, "relation_to_type": "type", "validated": true, "ani": 77.9205, "matched_fragments": 125, "total_fragments": 320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium mastitidis", "strain": "strain=DSM 44356", "accession": "GCA_000375365.1", "taxid": 161890, "species_taxid": 161890, "relation_to_type": "type", "validated": true, "ani": 77.074, "matched_fragments": 91, "total_fragments": 320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium nuruki", "strain": "strain=S6-4", "accession": "GCA_007970465.1", "taxid": 1032851, "species_taxid": 1032851, "relation_to_type": "type", "validated": true, "ani": 77.0416, "matched_fragments": 64, "total_fragments": 320, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 52.2, "contamination": 6.25, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_014837045.1", "gtdb_species": "s__Corynebacterium sp014837045", "ani": 98.6561, 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"coccobacillus_cell_shape": 0.014, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Actinomycetota", "c__Actinomycetes", "o__Mycobacteriales", "f__Mycobacteriaceae", "g__Corynebacterium", "s__Corynebacterium gallinarum" ], "_genome_taxon": [ "Corynebacterium", "sp.", "d__Bacteria", "p__Actinomycetota", "c__Actinomycetes", "o__Mycobacteriales", "f__Mycobacteriaceae", "g__Corynebacterium", "s__Corynebacterium gallinarum", "Bacteria", "Actinomycetota", "Actinomycetes", "Mycobacteriales", "Mycobacteriaceae", "Corynebacterium", "Corynebacterium", "gallinarum" ], "_meo": [ { "id": "MEO_0001192", "label": "anaerobic digester" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }