{
    "type": "genome",
    "identifier": "GCA_012839585.1",
    "organism": "Alcaligenaceae bacterium",
    "title": "Alcaligenaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Technical University of Denmark",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_012839585.1",
        "bioproject": "PRJNA602310",
        "biosample": "SAMN13893610",
        "wgs_master": "DUNB00000000.1",
        "refseq_category": "na",
        "taxid": "2021368",
        "species_taxid": "2021368",
        "organism_name": "Alcaligenaceae bacterium",
        "infraspecific_name": "",
        "isolate": "AS05jafATM_110",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/04/25",
        "asm_name": "ASM1283958v1",
        "submitter": "Technical University of Denmark",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/839/585/GCA_012839585.1_ASM1283958v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-04-25",
    "dateModified": "2020-04-25",
    "datePublished": "2020-04-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Alcaligenaceae bacterium"
        ],
        "sample_taxid": [
            "2021368"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "0.670 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 92.8,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2319607",
        "Number of Sequences": "157",
        "Longest Sequences (bp)": "101578",
        "N50 (bp)": "22762",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "49.1",
        "Number of CDSs": "2040",
        "Average Protein Length": "324.2",
        "Coding Ratio (%)": "85.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "40",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Paenalcaligenes hominis",
                "strain": "strain=CCM 7698",
                "accession": "GCA_014635265.1",
                "taxid": 643674,
                "species_taxid": 643674,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7186,
                "matched_fragments": 213,
                "total_fragments": 693,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenalcaligenes hominis",
                "strain": "strain=DSM 26613",
                "accession": "GCA_011927625.1",
                "taxid": 643674,
                "species_taxid": 643674,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6695,
                "matched_fragments": 216,
                "total_fragments": 693,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenalcaligenes niemegkensis",
                "strain": "strain=NGK35",
                "accession": "GCA_022230885.1",
                "taxid": 2895469,
                "species_taxid": 2895469,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1323,
                "matched_fragments": 71,
                "total_fragments": 693,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alcaligenes ammonioxydans",
                "strain": "strain=HO-1",
                "accession": "GCA_019343455.1",
                "taxid": 2582914,
                "species_taxid": 2582914,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8545,
                "matched_fragments": 64,
                "total_fragments": 693,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alcaligenes pakistanensis",
                "strain": "strain=KCTC 42083",
                "accession": "GCA_014652815.1",
                "taxid": 1482717,
                "species_taxid": 1482717,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.406,
                "matched_fragments": 70,
                "total_fragments": 693,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 92.8,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_012839585.1",
                "gtdb_species": "s__Paenalcaligenes sp012839585",
                "ani": 100.0,
                "matched_fragments": 686,
                "total_fragments": 693,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paenalcaligenes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_011927625.1",
                "gtdb_species": "s__Paenalcaligenes hominis",
                "ani": 78.6695,
                "matched_fragments": 216,
                "total_fragments": 693,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paenalcaligenes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.31",
                "min_intra_species_ani": "96.62",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_012518715.1",
                "gtdb_species": "s__Paenalcaligenes sp012518715",
                "ani": 78.4875,
                "matched_fragments": 185,
                "total_fragments": 693,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paenalcaligenes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_011290505.1",
                "gtdb_species": "s__Paenalcaligenes suwonensis",
                "ani": 76.9315,
                "matched_fragments": 88,
                "total_fragments": 693,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paenalcaligenes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004791645.1",
                "gtdb_species": "s__Paenalcaligenes sp004791645",
                "ani": 76.7957,
                "matched_fragments": 90,
                "total_fragments": 693,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paenalcaligenes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009497775.1",
                "gtdb_species": "s__Alcaligenes faecalis_D",
                "ani": 76.7443,
                "matched_fragments": 72,
                "total_fragments": 693,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alcaligenes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005311025.1",
                "gtdb_species": "s__Alcaligenes phenolicus",
                "ani": 76.6201,
                "matched_fragments": 60,
                "total_fragments": 693,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alcaligenes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.79",
                "min_intra_species_ani": "96.15",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCA_013416445.1",
                "gtdb_species": "s__Candidimonas_A sp013416445",
                "ani": 75.9362,
                "matched_fragments": 53,
                "total_fragments": 693,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Candidimonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.238,
        "cell_length": 0.088,
        "doubling_h": 0.123,
        "growth_tmp": 31.466,
        "optimum_tmp": 31.779,
        "optimum_ph": 7.03,
        "genome_size": 4870041.732,
        "gc_content": 61.513,
        "coding_genes": 4140.427,
        "rRNA16S_genes": 3.025,
        "tRNA_genes": 51.542,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.648,
        "range_salinity": 0.666,
        "facultative_respiration": 0.101,
        "anaerobic_respiration": 0.033,
        "aerobic_respiration": 0.864,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.8,
        "coccus_cell_shape": 0.125,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.075,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Paenalcaligenes",
        "s__Paenalcaligenes sp012839585"
    ],
    "_genome_taxon": [
        "Alcaligenaceae",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Paenalcaligenes",
        "s__Paenalcaligenes sp012839585",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Burkholderiaceae",
        "Paenalcaligenes",
        "Paenalcaligenes",
        "sp012839585"
    ],
    "_meo": [
        {
            "id": "MEO_0001192",
            "label": "anaerobic digester"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}