{ "type": "genome", "identifier": "GCA_012964995.1", "organism": "Dehalococcoidia bacterium", "title": "Dehalococcoidia bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Wisconsin-Madison", "publication": [ {} ], "properties": { "assembly_accession": "GCA_012964995.1", "bioproject": "PRJNA522654", "biosample": "SAMN10967421", "wgs_master": "DTTE00000000.1", "refseq_category": "na", "taxid": "2026734", "species_taxid": "2026734", "organism_name": "Dehalococcoidia bacterium", "infraspecific_name": "", "isolate": "UWMA-0070", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/04", "asm_name": "ASM1296499v1", "submitter": "University of Wisconsin-Madison", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/964/995/GCA_012964995.1_ASM1296499v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-04", "dateModified": "2020-05-04", "datePublished": "2020-05-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Dehalococcoidia bacterium" ], "sample_taxid": [ "2026734" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean:Lau Basin" ], "sample_host_location_id": [], "data_size": "1.036 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 86.46, "contamination": 1.74, "strain_heterogeneity": 75.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3623869", "Number of Sequences": "377", "Longest Sequences (bp)": "72693", "N50 (bp)": "14896", "Gap Ratio (%)": "0.121224", "GCcontent (%)": "57.6", "Number of CDSs": "3401", "Average Protein Length": "272.0", "Coding Ratio (%)": "76.6", "Number of rRNAs": "1", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 86.46, "contamination": 1.74, "strain_heterogeneity": 75.0 }, "gtdb_result": [ { "accession": "GCA_002710215.1", "gtdb_species": "s__UBA11650 sp002710215", "ani": 99.03, "matched_fragments": 730, "total_fragments": 1008, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__UBA3495;f__UBA3495;g__UBA11650", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.22", "min_intra_species_ani": "99.06", "mean_intra_species_af": "0.76", "min_intra_species_af": "0.73", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_002401285.1", "gtdb_species": "s__UBA11650 sp002401285", "ani": 91.1231, "matched_fragments": 647, "total_fragments": 1008, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__UBA3495;f__UBA3495;g__UBA11650", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.75", "min_intra_species_ani": "98.75", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.80", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002708395.1", "gtdb_species": "s__UBA11650 sp002708395", "ani": 80.2712, "matched_fragments": 405, "total_fragments": 1008, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__UBA3495;f__UBA3495;g__UBA11650", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.39", "min_intra_species_ani": "98.39", "mean_intra_species_af": "0.67", "min_intra_species_af": "0.67", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002746355.1", "gtdb_species": "s__UBA9611 sp002746355", "ani": 78.5218, "matched_fragments": 139, "total_fragments": 1008, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__UBA3495;f__UBA3495;g__UBA9611", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.11", "min_intra_species_ani": "98.97", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.85", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_002328185.1", "gtdb_species": "s__UBA9611 sp002328185", "ani": 77.4126, "matched_fragments": 134, "total_fragments": 1008, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__UBA3495;f__UBA3495;g__UBA9611", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.09", "min_intra_species_ani": "98.06", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.90", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_013204585.1", "gtdb_species": "s__UBA9611 sp013204585", "ani": 76.3241, "matched_fragments": 84, "total_fragments": 1008, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__UBA3495;f__UBA3495;g__UBA9611", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009840175.1", "gtdb_species": "s__VXOI01 sp009840175", "ani": 76.2479, "matched_fragments": 94, "total_fragments": 1008, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__UBA3495;f__UBA3495;g__VXOI01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.70", "min_intra_species_ani": "99.70", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Chloroflexota", "c__Dehalococcoidia", "o__UBA3495", "f__UBA3495", "g__UBA11650", "s__UBA11650 sp002710215" ], "_genome_taxon": [ "Dehalococcoidia", "bacterium", "d__Bacteria", "p__Chloroflexota", "c__Dehalococcoidia", "o__UBA3495", "f__UBA3495", "g__UBA11650", "s__UBA11650 sp002710215", "Bacteria", "Chloroflexota", "Dehalococcoidia", "UBA3495", "UBA3495", "UBA11650", "UBA11650", "sp002710215" ], "_meo": [ { "id": "MEO_0000031", "label": "hydrothermal vent" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }