{ "type": "genome", "identifier": "GCA_013002345.1", "organism": "Rhodothermales bacterium", "title": "Rhodothermales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Monash University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013002345.1", "bioproject": "PRJNA609151", "biosample": "SAMN14260506", "wgs_master": "JABDKH000000000.1", "refseq_category": "na", "taxid": "2306054", "species_taxid": "2306054", "organism_name": "Rhodothermales bacterium", "infraspecific_name": "", "isolate": "SS_bin_44", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/09", "asm_name": "ASM1300234v1", "submitter": "Monash University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/002/345/GCA_013002345.1_ASM1300234v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-09", "dateModified": "2020-05-09", "datePublished": "2020-05-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodothermales bacterium" ], "sample_taxid": [ "2306054" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Middle Park Beach, Port Phillip Bay" ], "sample_host_location_id": [], "data_size": "1.176 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.08, "contamination": 6.25, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4103496", "Number of Sequences": "381", "Longest Sequences (bp)": "82849", "N50 (bp)": "17426", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.5", "Number of CDSs": "3092", "Average Protein Length": "344.1", "Coding Ratio (%)": "77.8", "Number of rRNAs": "2", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodocaloribacter litoris", "strain": "strain=ISCAR-4553", "accession": "GCA_011682235.2", "taxid": 2558931, "species_taxid": 2558931, "relation_to_type": "type", "validated": true, "ani": 75.86, "matched_fragments": 64, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.08, "contamination": 6.25, "strain_heterogeneity": 50.0 }, "gtdb_result": [ { "accession": "GCA_013002345.1", "gtdb_species": "s__JABDKH01 sp013002345", "ani": 100.0, "matched_fragments": 1155, "total_fragments": 1172, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Rhodothermales;f__UBA10348;g__JABDKH01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_018679295.1", "gtdb_species": "s__JABDKH01 sp018679295", "ani": 76.2139, "matched_fragments": 62, "total_fragments": 1172, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Rhodothermales;f__UBA10348;g__JABDKH01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011682235.1", "gtdb_species": "s__ISCAR-4553 sp011682235", "ani": 75.7646, "matched_fragments": 62, "total_fragments": 1172, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Rhodothermales;f__ISCAR-4553;g__ISCAR-4553", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003285105.1", "gtdb_species": "s__MEBICO9517 sp003285105", "ani": 75.3863, "matched_fragments": 52, "total_fragments": 1172, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Rhodothermales;f__MEBIC09517;g__MEBICO9517", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.96", "min_intra_species_ani": "96.85", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.204, "cell_length": 1.035, "doubling_h": null, "growth_tmp": null, "optimum_tmp": 33.833, "optimum_ph": 7.5, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Rhodothermia", "o__Rhodothermales", "f__JABDKH01", "g__JABDKH01", "s__JABDKH01 sp013002345" ], "_genome_taxon": [ "Rhodothermales", "bacterium", "d__Bacteria", "p__Bacteroidota", "c__Rhodothermia", "o__Rhodothermales", "f__JABDKH01", "g__JABDKH01", "s__JABDKH01 sp013002345", "Bacteria", "Bacteroidota", "Rhodothermia", "Rhodothermales", "JABDKH01", "JABDKH01", "JABDKH01", "sp013002345" ], "_meo": [ { "id": "MEO_0000192", "label": "beach sand" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }