{ "type": "genome", "identifier": "GCA_013002425.1", "organism": "Gemmatimonadota bacterium", "title": "Gemmatimonadota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Monash University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013002425.1", "bioproject": "PRJNA609151", "biosample": "SAMN14260489", "wgs_master": "JABDJQ000000000.1", "refseq_category": "na", "taxid": "2026742", "species_taxid": "2026742", "organism_name": "Gemmatimonadota bacterium", "infraspecific_name": "", "isolate": "SS_bin_27", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/09", "asm_name": "ASM1300242v1", "submitter": "Monash University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/002/425/GCA_013002425.1_ASM1300242v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-09", "dateModified": "2020-05-09", "datePublished": "2020-05-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Gemmatimonadota bacterium" ], "sample_taxid": [ "2026742" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Middle Park Beach, Port Phillip Bay" ], "sample_host_location_id": [], "data_size": "1.087 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.29, "contamination": 7.7, "strain_heterogeneity": 40.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3888216", "Number of Sequences": "830", "Longest Sequences (bp)": "44875", "N50 (bp)": "5940", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.2", "Number of CDSs": "2467", "Average Protein Length": "339.5", "Coding Ratio (%)": "64.6", "Number of rRNAs": "1", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 91.29, "contamination": 7.7, "strain_heterogeneity": 40.0 }, "gtdb_result": [ { "accession": "GCA_013002425.1", "gtdb_species": "s__JABDJQ01 sp013002425", "ani": 100.0, "matched_fragments": 848, "total_fragments": 860, "gtdb_taxonomy": "d__Bacteria;p__JABDJQ01;c__JABDJQ01;o__JABDJQ01;f__JABDJQ01;g__JABDJQ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_016867715.1", "gtdb_species": "s__VGIW01 sp016867715", "ani": 75.7808, "matched_fragments": 65, "total_fragments": 860, "gtdb_taxonomy": "d__Bacteria;p__JABDJQ01;c__JABDJQ01;o__JABDJQ01;f__JABDJQ01;g__VGIW01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016930695.1", "gtdb_species": "s__JAFGGD01 sp016930695", "ani": 75.3642, "matched_fragments": 53, "total_fragments": 860, "gtdb_taxonomy": "d__Bacteria;p__JABDJQ01;c__JABDJQ01;o__JABDJQ01;f__JABDJQ01;g__JAFGGD01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016714045.1", "gtdb_species": "s__JADJNY01 sp016714045", "ani": 74.8719, "matched_fragments": 55, "total_fragments": 860, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__UBA1135;o__UBA1135;f__GCA-002686595;g__JADJNY01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016793095.1", "gtdb_species": "s__JAEUJQ01 sp016793095", "ani": 74.5329, "matched_fragments": 59, "total_fragments": 860, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__JAEUJQ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__JABDJQ01", "c__JABDJQ01", "o__JABDJQ01", "f__JABDJQ01", "g__JABDJQ01", "s__JABDJQ01 sp013002425" ], "_genome_taxon": [ "Gemmatimonadota", "bacterium", "d__Bacteria", "p__JABDJQ01", "c__JABDJQ01", "o__JABDJQ01", "f__JABDJQ01", "g__JABDJQ01", "s__JABDJQ01 sp013002425", "Bacteria", "JABDJQ01", "JABDJQ01", "JABDJQ01", "JABDJQ01", "JABDJQ01", "JABDJQ01", "sp013002425" ], "_meo": [ { "id": "MEO_0000192", "label": "beach sand" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }