{ "type": "genome", "identifier": "GCA_013041765.1", "organism": "Dactylosporangium sp.", "title": "Dactylosporangium sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Monash University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013041765.1", "bioproject": "PRJNA623061", "biosample": "SAMN14538101", "wgs_master": "JABDRL000000000.1", "refseq_category": "na", "taxid": "60453", "species_taxid": "60453", "organism_name": "Dactylosporangium sp.", "infraspecific_name": "", "isolate": "Site_C28", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/11", "asm_name": "ASM1304176v1", "submitter": "Monash University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/041/765/GCA_013041765.1_ASM1304176v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-11", "dateModified": "2020-05-11", "datePublished": "2020-05-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Dactylosporangium sp." ], "sample_taxid": [ "60453" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Middle Park Beach, Port Phillip Bay site C" ], "sample_host_location_id": [], "data_size": "1.424 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5190429", "Number of Sequences": "434", "Longest Sequences (bp)": "88887", "N50 (bp)": "16537", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.3", "Number of CDSs": "4299", "Average Protein Length": "317.0", "Coding Ratio (%)": "78.8", "Number of rRNAs": "0", "Number of tRNAs": "64", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora echinaurantiaca", "strain": "strain=DSM 43904", "accession": "GCA_900090235.1", "taxid": 47857, "species_taxid": 47857, "relation_to_type": "type", "validated": true, "ani": 77.2497, "matched_fragments": 409, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora endolithica", "strain": "strain=DSM 44398", "accession": "GCA_007994185.1", "taxid": 230091, "species_taxid": 230091, "relation_to_type": "type", "validated": true, "ani": 77.2064, "matched_fragments": 372, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phaseoli", "strain": "strain=NBRC 110907", "accession": "GCA_016863675.1", "taxid": 1144548, "species_taxid": 1144548, "relation_to_type": "type", "validated": true, "ani": 77.1649, "matched_fragments": 326, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora radicis", "strain": "strain=AZ1-13", "accession": "GCA_003583405.1", "taxid": 1894971, "species_taxid": 1894971, "relation_to_type": "type", "validated": true, "ani": 77.1522, "matched_fragments": 340, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora sagamiensis", "strain": "strain=DSM 43912", "accession": "GCA_007829995.1", "taxid": 47875, "species_taxid": 47875, "relation_to_type": "type", "validated": true, "ani": 77.1266, "matched_fragments": 383, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora endolithica", "strain": "strain=JCM 12677", "accession": "GCA_003626595.1", "taxid": 230091, "species_taxid": 230091, "relation_to_type": "type", "validated": true, "ani": 77.1237, "matched_fragments": 372, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora rhizosphaerae", "strain": "strain=DSM 45431", "accession": "GCA_900091465.1", "taxid": 568872, "species_taxid": 568872, "relation_to_type": "type", "validated": true, "ani": 77.1139, "matched_fragments": 375, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora sagamiensis", "strain": "strain=JCM 3310", "accession": "GCA_014680085.1", "taxid": 47875, "species_taxid": 47875, "relation_to_type": "type", "validated": true, "ani": 77.1109, "matched_fragments": 386, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora krabiensis", "strain": "strain=DSM 45344", "accession": "GCA_900091425.1", "taxid": 307121, "species_taxid": 307121, "relation_to_type": "type", "validated": true, "ani": 77.0736, "matched_fragments": 376, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora inyonensis", "strain": "strain=DSM 46123", "accession": "GCA_900091415.1", "taxid": 47866, "species_taxid": 47866, "relation_to_type": "type", "validated": true, "ani": 77.0591, "matched_fragments": 354, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora eburnea", "strain": "strain=DSM 44814", "accession": "GCA_900090225.1", "taxid": 227316, "species_taxid": 227316, "relation_to_type": "type", "validated": true, "ani": 77.0531, "matched_fragments": 395, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora rosaria", "strain": "strain=DSM 803", "accession": "GCA_001567585.1", "taxid": 47874, "species_taxid": 47874, "relation_to_type": "type", "validated": true, "ani": 77.0232, "matched_fragments": 402, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora olivasterospora", "strain": "strain=DSM 43868", "accession": "GCA_007830265.1", "taxid": 1880, "species_taxid": 1880, "relation_to_type": "type", "validated": true, "ani": 77.0159, "matched_fragments": 367, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora humida", "strain": "strain=MMS20-R1-14", "accession": "GCA_016901255.1", "taxid": 2809018, "species_taxid": 2809018, "relation_to_type": "type", "validated": true, "ani": 76.9912, "matched_fragments": 425, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora chersina", "strain": "strain=DSM 44151", "accession": "GCA_900091475.1", "taxid": 47854, "species_taxid": 47854, "relation_to_type": "type", "validated": true, "ani": 76.9742, "matched_fragments": 411, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora echinofusca", "strain": "strain=DSM 43913", "accession": "GCA_900091445.1", "taxid": 47858, "species_taxid": 47858, "relation_to_type": "type", "validated": true, "ani": 76.9709, "matched_fragments": 408, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora chaiyaphumensis", "strain": "strain=DSM 45246", "accession": "GCA_900091435.1", "taxid": 307119, "species_taxid": 307119, "relation_to_type": "type", "validated": true, "ani": 76.9456, "matched_fragments": 426, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ferruginea", "strain": "strain=28ISP2-46", "accession": "GCA_013694245.1", "taxid": 2749844, "species_taxid": 2749844, "relation_to_type": "type", "validated": true, "ani": 76.934, "matched_fragments": 406, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phytohabitans rumicis", "strain": "strain=NBRC 108638", "accession": "GCA_011764445.1", "taxid": 1076125, "species_taxid": 1076125, "relation_to_type": "type", "validated": true, "ani": 76.9269, "matched_fragments": 420, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora siamensis", "strain": "strain=DSM 45097", "accession": "GCA_900090305.1", "taxid": 299152, "species_taxid": 299152, "relation_to_type": "type", "validated": true, "ani": 76.9066, "matched_fragments": 387, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phytohabitans suffuscus", "strain": "strain=NBRC 105367", "accession": "GCA_011764565.1", "taxid": 624315, "species_taxid": 624315, "relation_to_type": "type", "validated": true, "ani": 76.7926, "matched_fragments": 417, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgisporangium aliadipatigenens", "strain": "strain=NBRC 105644", "accession": "GCA_016863615.1", "taxid": 741659, "species_taxid": 741659, "relation_to_type": "type", "validated": true, "ani": 76.7866, "matched_fragments": 421, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium siamense", "strain": "strain=NBRC 106093", "accession": "GCA_016862795.1", "taxid": 685454, "species_taxid": 685454, "relation_to_type": "type", "validated": true, "ani": 76.7244, "matched_fragments": 484, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgisporangium ochraceum", "strain": "strain=NBRC 16418", "accession": "GCA_016863655.1", "taxid": 65505, "species_taxid": 65505, "relation_to_type": "type", "validated": true, "ani": 76.6918, "matched_fragments": 453, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium matsuzakiense", "strain": "strain=NRRL B-16293", "accession": "GCA_025264725.1", "taxid": 53360, "species_taxid": 53360, "relation_to_type": "type", "validated": true, "ani": 76.6811, "matched_fragments": 458, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Asanoa ishikariensis", "strain": "strain=NBRC 14551", "accession": "GCA_016862535.1", "taxid": 137265, "species_taxid": 137265, "relation_to_type": "type", "validated": true, "ani": 76.6545, "matched_fragments": 359, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Asanoa ishikariensis", "strain": "strain=DSM 44718", "accession": "GCA_900107455.1", "taxid": 137265, "species_taxid": 137265, "relation_to_type": "type", "validated": true, "ani": 76.636, "matched_fragments": 358, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes hulinensis", "strain": "strain=NEAU-M9", "accession": "GCA_019429605.1", "taxid": 1144547, "species_taxid": 1144547, "relation_to_type": "type", "validated": true, "ani": 76.6314, "matched_fragments": 351, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phytohabitans houttuyneae", "strain": "strain=NBRC 108639", "accession": "GCA_011764425.1", "taxid": 1076126, "species_taxid": 1076126, "relation_to_type": "type", "validated": true, "ani": 76.6241, "matched_fragments": 424, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes flavus", "strain": "strain=NEAU-H7", "accession": "GCA_017592555.1", "taxid": 2820290, "species_taxid": 2820290, "relation_to_type": "type", "validated": true, "ani": 76.6207, "matched_fragments": 369, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgisporangium aurantiacum", "strain": "strain=NBRC 16421", "accession": "GCA_016863635.1", "taxid": 175570, "species_taxid": 175570, "relation_to_type": "type", "validated": true, "ani": 76.579, "matched_fragments": 443, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planobispora takensis", "strain": "strain=NBRC 109077", "accession": "GCA_016863195.1", "taxid": 1367882, "species_taxid": 1367882, "relation_to_type": "type", "validated": true, "ani": 75.8718, "matched_fragments": 289, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium kibberense", "strain": "strain=DSM 17687", "accession": "GCA_006519705.1", "taxid": 282060, "species_taxid": 282060, "relation_to_type": "type", "validated": true, "ani": 75.8449, "matched_fragments": 142, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia hydrocarbonoxydans", "strain": "strain=NBRC 14498", "accession": "GCA_006539565.1", "taxid": 76726, "species_taxid": 76726, "relation_to_type": "type", "validated": true, "ani": 75.8082, "matched_fragments": 224, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_013041765.1", "gtdb_species": "s__JABDRL01 sp013041765", "ani": 100.0, "matched_fragments": 1496, "total_fragments": 1511, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__JABDRL01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_016926535.1", "gtdb_species": "s__JABDRL01 sp016926535", "ani": 79.1969, "matched_fragments": 406, "total_fragments": 1511, "gtdb_taxonomy": 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