{ "type": "genome", "identifier": "GCA_013042245.1", "organism": "Winogradskyella sp.", "title": "Winogradskyella sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Monash University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013042245.1", "bioproject": "PRJNA623061", "biosample": "SAMN14538075", "wgs_master": "JABDQL000000000.1", "refseq_category": "na", "taxid": "1883156", "species_taxid": "1883156", "organism_name": "Winogradskyella sp.", "infraspecific_name": "", "isolate": "Site_C2", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/11", "asm_name": "ASM1304224v1", "submitter": "Monash University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/042/245/GCA_013042245.1_ASM1304224v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-11", "dateModified": "2020-05-11", "datePublished": "2020-05-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Winogradskyella sp." ], "sample_taxid": [ "1883156" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Middle Park Beach, Port Phillip Bay site C" ], "sample_host_location_id": [], "data_size": "0.724 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 94.79, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2575050", "Number of Sequences": "154", "Longest Sequences (bp)": "161685", "N50 (bp)": "24339", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.4", "Number of CDSs": "2332", "Average Protein Length": "324.0", "Coding Ratio (%)": "88.0", "Number of rRNAs": "1", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Winogradskyella jejuensis", "strain": "strain=DSM 25330", "accession": "GCA_900129745.1", "taxid": 1089305, "species_taxid": 1089305, "relation_to_type": "type", "validated": true, "ani": 79.745, "matched_fragments": 438, "total_fragments": 779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella haliclonae", "strain": "strain=CCM 8681", "accession": "GCA_014635865.1", "taxid": 2048558, "species_taxid": 2048558, "relation_to_type": "type", "validated": true, "ani": 79.5137, "matched_fragments": 412, "total_fragments": 779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella wandonensis", "strain": "strain=CECT 8445", "accession": "GCA_004346845.1", "taxid": 1442586, "species_taxid": 1442586, "relation_to_type": "type", "validated": true, "ani": 79.0777, "matched_fragments": 417, "total_fragments": 779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella litoriviva", "strain": "strain=KMM6491", "accession": "GCA_013249065.1", "taxid": 1220182, "species_taxid": 1220182, "relation_to_type": "type", "validated": true, "ani": 78.2009, "matched_fragments": 289, "total_fragments": 779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella flava", "strain": "strain=KCTC 52348", "accession": "GCA_014243395.1", "taxid": 1884876, "species_taxid": 1884876, "relation_to_type": "type", "validated": true, "ani": 78.0801, "matched_fragments": 226, "total_fragments": 779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella echinorum", "strain": "strain=KCTC 22026", "accession": "GCA_014284085.1", "taxid": 538189, "species_taxid": 538189, "relation_to_type": "type", "validated": true, "ani": 78.0639, "matched_fragments": 289, "total_fragments": 779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella echinorum", "strain": "strain=KCTC 22026", "accession": "GCA_014297365.1", "taxid": 538189, "species_taxid": 538189, "relation_to_type": "type", "validated": true, "ani": 78.0596, "matched_fragments": 290, "total_fragments": 779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella endarachnes", "strain": "strain=HL2-2", "accession": "GCA_009741275.1", "taxid": 2681965, "species_taxid": 2681965, "relation_to_type": "type", "validated": true, "ani": 78.0152, "matched_fragments": 271, "total_fragments": 779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella marina", "strain": "strain=F6397", "accession": "GCA_015645385.1", "taxid": 2785530, "species_taxid": 2785530, "relation_to_type": 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