{ "type": "genome", "identifier": "GCA_013042405.1", "organism": "Xanthomonadales bacterium", "title": "Xanthomonadales bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Monash University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013042405.1", "bioproject": "PRJNA623061", "biosample": "SAMN14538068", "wgs_master": "JABDQE000000000.1", "refseq_category": "na", "taxid": "2006849", "species_taxid": "2006849", "organism_name": "Xanthomonadales bacterium", "infraspecific_name": "", "isolate": "Site_B32", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/11", "asm_name": "ASM1304240v1", "submitter": "Monash University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/042/405/GCA_013042405.1_ASM1304240v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-11", "dateModified": "2020-05-11", "datePublished": "2020-05-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Xanthomonadales bacterium" ], "sample_taxid": [ "2006849" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Middle Park Beach, Port Phillip Bay site B" ], "sample_host_location_id": [], "data_size": "0.580 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 70.33, "contamination": 0.46, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": 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"organism_name": "Luteimonas marina", "strain": "strain=FR1330", "accession": "GCA_007859325.1", "taxid": 488485, "species_taxid": 488485, "relation_to_type": "type", "validated": true, "ani": 76.5516, "matched_fragments": 72, "total_fragments": 385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas metalli", "strain": "strain=CF5-1", "accession": "GCA_000747155.1", "taxid": 948077, "species_taxid": 948077, "relation_to_type": "type", "validated": true, "ani": 76.5419, "matched_fragments": 55, "total_fragments": 385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dokdonella koreensis", "strain": "strain=DS-123", "accession": "GCA_001632775.1", "taxid": 323415, "species_taxid": 323415, "relation_to_type": "type", "validated": true, "ani": 75.7555, "matched_fragments": 70, "total_fragments": 385, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 70.33, "contamination": 0.46, 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