{ "type": "genome", "identifier": "GCA_013042425.1", "organism": "Winogradskyella sp.", "title": "Winogradskyella sp.", "description": "derived from metagenome; fragmented assembly", "data type": "Genome sequencing and assembly", "organization": "Monash University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013042425.1", "bioproject": "PRJNA623061", "biosample": "SAMN14538067", "wgs_master": "JABDQD000000000.1", "refseq_category": "na", "taxid": "1883156", "species_taxid": "1883156", "organism_name": "Winogradskyella sp.", "infraspecific_name": "", "isolate": "Site_B31", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/11", "asm_name": "ASM1304242v1", "submitter": "Monash University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/042/425/GCA_013042425.1_ASM1304242v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-11", "dateModified": "2020-05-11", "datePublished": "2020-05-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Winogradskyella sp." ], "sample_taxid": [ "1883156" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Middle Park Beach, Port Phillip Bay site B" ], "sample_host_location_id": [], "data_size": "0.533 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 70.02, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1863159", "Number of Sequences": "456", "Longest Sequences (bp)": "17342", "N50 (bp)": "4361", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.0", "Number of CDSs": "1292", "Average Protein Length": "289.5", "Coding Ratio (%)": "60.2", "Number of rRNAs": "0", "Number of tRNAs": "16", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Winogradskyella echinorum", "strain": "strain=KCTC 22026", "accession": "GCA_014284085.1", "taxid": 538189, "species_taxid": 538189, "relation_to_type": "type", "validated": true, "ani": 77.4121, "matched_fragments": 111, "total_fragments": 363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella echinorum", "strain": "strain=KCTC 22026", "accession": "GCA_014297365.1", "taxid": 538189, "species_taxid": 538189, "relation_to_type": "type", "validated": true, "ani": 77.4121, "matched_fragments": 111, "total_fragments": 363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Seonamhaeicola maritimus", "strain": "strain=1505", "accession": "GCA_008056315.1", "taxid": 2591822, "species_taxid": 2591822, "relation_to_type": "type", "validated": true, "ani": 77.3165, "matched_fragments": 53, "total_fragments": 363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella haliclonae", "strain": "strain=CCM 8681", "accession": "GCA_014635865.1", "taxid": 2048558, "species_taxid": 2048558, "relation_to_type": "type", "validated": true, "ani": 77.204, "matched_fragments": 84, "total_fragments": 363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olleya aquimaris", "strain": "strain=DSM 24464", "accession": "GCA_003259525.1", "taxid": 639310, "species_taxid": 639310, "relation_to_type": "type", "validated": true, "ani": 77.1321, "matched_fragments": 60, "total_fragments": 363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella sediminis", "strain": "strain=DSM 28134", "accession": "GCA_003387355.1", "taxid": 1382466, "species_taxid": 1382466, "relation_to_type": "type", "validated": true, "ani": 77.0892, "matched_fragments": 80, "total_fragments": 363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella ursingii", "strain": "strain=HL4150", "accession": "GCA_013403975.1", "taxid": 2686079, "species_taxid": 2686079, "relation_to_type": "type", "validated": true, "ani": 77.0833, "matched_fragments": 93, "total_fragments": 363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera ponticola", "strain": "strain=MM-14", "accession": "GCA_012931685.1", "taxid": 2042995, "species_taxid": 2042995, "relation_to_type": "type", "validated": true, "ani": 76.968, "matched_fragments": 57, "total_fragments": 363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens luteolus", "strain": "strain=XSD401", "accession": "GCA_021032705.1", "taxid": 2855840, "species_taxid": 2855840, "relation_to_type": "type", "validated": true, "ani": 76.9541, "matched_fragments": 78, "total_fragments": 363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter mikhailovii", "strain": "strain=KCTC 12710", "accession": "GCA_014651495.1", "taxid": 425498, "species_taxid": 425498, "relation_to_type": "type", "validated": true, "ani": 76.9401, "matched_fragments": 50, "total_fragments": 363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera neustonica", "strain": "strain=JCM19743", "accession": "GCA_002895005.1", "taxid": 1445657, "species_taxid": 1445657, "relation_to_type": "type", "validated": true, "ani": 76.8966, "matched_fragments": 57, "total_fragments": 363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pacificus", "strain": "strain=H164", "accession": "GCA_008033385.1", "taxid": 2599389, "species_taxid": 2599389, "relation_to_type": "type", "validated": true, "ani": 76.8818, "matched_fragments": 53, "total_fragments": 363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella helgolandensis", "strain": "strain=Z963", "accession": "GCA_013404085.1", "taxid": 2697010, "species_taxid": 2697010, "relation_to_type": "type", "validated": true, "ani": 76.7783, "matched_fragments": 97, "total_fragments": 363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens mesophilus", "strain": "strain=JCM 13413", "accession": "GCA_000826645.1", "taxid": 325473, "species_taxid": 325473, "relation_to_type": "type", "validated": true, "ani": 76.7685, "matched_fragments": 88, "total_fragments": 363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesoflavibacter profundi", "strain": "strain=YC1039", "accession": "GCA_014764305.1", "taxid": 2708110, "species_taxid": 2708110, "relation_to_type": "type", "validated": true, "ani": 76.6898, "matched_fragments": 70, "total_fragments": 363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella psychrotolerans", "strain": "strain=RS-3", "accession": "GCA_000427335.1", "taxid": 1344585, "species_taxid": 1344585, "relation_to_type": "type", "validated": true, "ani": 76.639, "matched_fragments": 94, "total_fragments": 363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella flava", "strain": "strain=T58", "accession": "GCA_004310325.1", "taxid": 2527939, "species_taxid": 2527939, "relation_to_type": "type", "validated": true, "ani": 76.6311, "matched_fragments": 57, "total_fragments": 363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella pacifica", "strain": "strain=SW033", "accession": "GCA_004310335.1", "taxid": 1080224, "species_taxid": 1080224, "relation_to_type": "type", "validated": true, "ani": 76.6223, "matched_fragments": 62, "total_fragments": 363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga algicola", "strain": "strain=Y03", "accession": "GCA_012910715.1", "taxid": 2729136, "species_taxid": 2729136, "relation_to_type": "type", "validated": true, "ani": 76.6103, "matched_fragments": 53, "total_fragments": 363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Seonamhaeicola algicola", "strain": "strain=Gy8", "accession": "GCA_007997385.1", "taxid": 1719036, "species_taxid": 1719036, "relation_to_type": "type", "validated": true, "ani": 76.5851, "matched_fragments": 69, "total_fragments": 363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera marina", "strain": "strain=NBU2968", "accession": "GCA_019880635.1", "taxid": 2873265, "species_taxid": 2873265, "relation_to_type": "type", "validated": true, "ani": 76.5148, "matched_fragments": 71, "total_fragments": 363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Confluentibacter sediminis", "strain": "strain=DSL-48", "accession": "GCA_003258355.1", "taxid": 2219045, "species_taxid": 2219045, "relation_to_type": "type", "validated": true, "ani": 76.4755, "matched_fragments": 55, "total_fragments": 363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesoflavibacter zeaxanthinifaciens", "strain": "strain=DSM 18436", "accession": "GCA_000422365.1", "taxid": 393060, "species_taxid": 393060, "relation_to_type": "type", "validated": true, "ani": 76.4737, "matched_fragments": 64, "total_fragments": 363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesoflavibacter zeaxanthinifaciens subsp. sabulilitoris", "strain": "strain=CECT 8597", "accession": "GCA_014191595.1", "taxid": 1520893, "species_taxid": 393060, "relation_to_type": "type", "validated": true, "ani": 76.4693, "matched_fragments": 63, "total_fragments": 363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens jangbogonensis", "strain": "strain=PAMC 27130", "accession": "GCA_000797465.1", "taxid": 1484460, "species_taxid": 1484460, "relation_to_type": "type", "validated": true, "ani": 76.45, "matched_fragments": 77, "total_fragments": 363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanihabitans sediminis", "strain": "strain=DSM 28133", "accession": "GCA_003315315.1", "taxid": 1812012, "species_taxid": 1812012, "relation_to_type": "type", "validated": true, "ani": 76.3828, "matched_fragments": 54, "total_fragments": 363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesoflavibacter zeaxanthinifaciens subsp. sabulilitoris", "strain": "strain=KCTC 42117", "accession": "GCA_003008435.1", "taxid": 1520893, "species_taxid": 393060, "relation_to_type": "type", "validated": true, "ani": 76.366, "matched_fragments": 64, "total_fragments": 363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanihabitans sediminis", "strain": "strain=S9-10", "accession": "GCA_003337215.1", "taxid": 1812012, "species_taxid": 1812012, "relation_to_type": "type", "validated": true, "ani": 76.346, "matched_fragments": 55, "total_fragments": 363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacinutrix mariniflava", "strain": "strain=AKS432", "accession": "GCA_001418015.1", "taxid": 342955, "species_taxid": 342955, "relation_to_type": "type", "validated": true, "ani": 76.0935, "matched_fragments": 71, "total_fragments": 363, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 70.02, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_013003655.1", "gtdb_species": "s__Winogradskyella sp013003655", "ani": 98.5562, "matched_fragments": 259, "total_fragments": 363, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.63", "min_intra_species_ani": "98.32", "mean_intra_species_af": "0.72", "min_intra_species_af": "0.67", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCF_014297365.1", "gtdb_species": "s__Winogradskyella echinorum", "ani": 77.4121, "matched_fragments": 111, "total_fragments": 363, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_008056315.1", "gtdb_species": "s__Seonamhaeicola maritimus", "ani": 77.3165, "matched_fragments": 53, "total_fragments": 363, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Seonamhaeicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013249045.1", "gtdb_species": "s__Winogradskyella eckloniae", "ani": 77.1624, "matched_fragments": 88, "total_fragments": 363, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003259525.1", "gtdb_species": "s__Olleya aquimaris", "ani": 77.1321, "matched_fragments": 60, "total_fragments": 363, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Olleya", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018860565.1", "gtdb_species": "s__Winogradskyella psychrotolerans_B", "ani": 77.1256, "matched_fragments": 98, "total_fragments": 363, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003387355.1", "gtdb_species": "s__Winogradskyella sediminis", "ani": 77.0892, "matched_fragments": 80, "total_fragments": 363, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.63", "min_intra_species_ani": "98.63", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_013403975.1", "gtdb_species": "s__Winogradskyella ursingii", "ani": 77.0833, "matched_fragments": 93, "total_fragments": 363, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003610635.1", "gtdb_species": "s__Ichthyenterobacterium magnum", "ani": 77.031, "matched_fragments": 93, "total_fragments": 363, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Ichthyenterobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003335675.1", "gtdb_species": "s__Winogradskyella sp003335675", "ani": 77.0092, "matched_fragments": 83, "total_fragments": 363, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012931685.1", "gtdb_species": "s__Pseudobizionia ponticola", "ani": 76.968, "matched_fragments": 57, "total_fragments": 363, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Pseudobizionia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.35", "min_intra_species_ani": "97.35", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014651495.1", "gtdb_species": "s__Algibacter_E mikhailovii", "ani": 76.9401, "matched_fragments": 50, "total_fragments": 363, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Algibacter_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003386165.1", "gtdb_species": "s__Winogradskyella eximia", "ani": 76.9307, "matched_fragments": 114, "total_fragments": 363, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003712105.1", "gtdb_species": "s__Winogradskyella sp003712105", "ani": 76.9144, "matched_fragments": 89, "total_fragments": 363, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013213975.1", "gtdb_species": "s__Winogradskyella sp013213975", "ani": 76.8018, "matched_fragments": 84, "total_fragments": 363, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001874335.1", "gtdb_species": "s__MedPE-SWsnd-G2 sp001874335", 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