{ "type": "genome", "identifier": "GCA_013042535.1", "organism": "Flavobacteriaceae bacterium", "title": "Flavobacteriaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Monash University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013042535.1", "bioproject": "PRJNA623061", "biosample": "SAMN14538063", "wgs_master": "JABDPZ000000000.1", "refseq_category": "na", "taxid": "1871037", "species_taxid": "1871037", "organism_name": "Flavobacteriaceae bacterium", "infraspecific_name": "", "isolate": "Site_B27", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/11", "asm_name": "ASM1304253v1", "submitter": "Monash University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/042/535/GCA_013042535.1_ASM1304253v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-11", "dateModified": "2020-05-11", "datePublished": "2020-05-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacteriaceae bacterium" ], "sample_taxid": [ "1871037" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Middle Park Beach, Port Phillip Bay site B" ], "sample_host_location_id": [], "data_size": "0.819 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2881466", "Number of Sequences": "99", "Longest Sequences (bp)": "171934", "N50 (bp)": "58672", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.2", "Number of CDSs": "2456", "Average Protein Length": "341.6", "Coding Ratio (%)": "87.4", "Number of rRNAs": "0", "Number of tRNAs": "30", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hanstruepera ponticola", "strain": "strain=MM-14", "accession": "GCA_012931685.1", "taxid": 2042995, "species_taxid": 2042995, "relation_to_type": "type", "validated": true, "ani": 77.3242, "matched_fragments": 139, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontimicrobium aquaticum", "strain": "strain=CAU 1491", "accession": "GCA_005047595.1", "taxid": 2565367, "species_taxid": 2565367, "relation_to_type": "type", "validated": true, "ani": 77.2243, "matched_fragments": 158, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens luteolus", "strain": "strain=XSD401", "accession": "GCA_021032705.1", "taxid": 2855840, "species_taxid": 2855840, "relation_to_type": "type", "validated": true, "ani": 77.0175, "matched_fragments": 153, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bizionia echini", "strain": "strain=DSM 23925", "accession": "GCA_900115185.1", "taxid": 649333, "species_taxid": 649333, "relation_to_type": "type", "validated": true, "ani": 76.973, "matched_fragments": 122, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivivens insulae", "strain": "strain=AH-MY3", "accession": "GCA_022662195.1", "taxid": 1621988, "species_taxid": 1621988, "relation_to_type": "type", "validated": true, "ani": 76.9117, "matched_fragments": 109, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella pacifica", "strain": "strain=SW033", "accession": "GCA_004310335.1", "taxid": 1080224, "species_taxid": 1080224, "relation_to_type": "type", "validated": true, "ani": 76.887, "matched_fragments": 99, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera neustonica", "strain": "strain=JCM19743", "accession": "GCA_002895005.1", "taxid": 1445657, "species_taxid": 1445657, "relation_to_type": "type", "validated": true, "ani": 76.8835, "matched_fragments": 129, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella pacifica", "strain": "strain=CGMCC 1.11009", "accession": "GCA_014636335.1", "taxid": 1080224, "species_taxid": 1080224, "relation_to_type": "type", "validated": true, "ani": 76.8532, "matched_fragments": 99, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera marina", "strain": "strain=NBU2968", "accession": "GCA_019880635.1", "taxid": 2873265, "species_taxid": 2873265, "relation_to_type": "type", "validated": true, "ani": 76.8367, "matched_fragments": 141, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pectinivorans", "strain": "strain=DSM 25730", "accession": "GCA_900112595.1", "taxid": 870482, "species_taxid": 870482, "relation_to_type": "type", "validated": true, "ani": 76.8185, "matched_fragments": 117, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens jangbogonensis", "strain": "strain=PAMC 27130", "accession": "GCA_000797465.1", "taxid": 1484460, "species_taxid": 1484460, "relation_to_type": "type", "validated": true, "ani": 76.8142, "matched_fragments": 147, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella echinorum", "strain": "strain=KCTC 22026", "accession": "GCA_014284085.1", "taxid": 538189, "species_taxid": 538189, "relation_to_type": "type", "validated": true, "ani": 76.7943, "matched_fragments": 118, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gelidibacter algens", "strain": "strain=DSM 12408", "accession": "GCA_003259265.1", "taxid": 49280, "species_taxid": 49280, "relation_to_type": "type", "validated": true, "ani": 76.7681, "matched_fragments": 96, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella thalassocola", "strain": "strain=DSM 15363", "accession": "GCA_900099995.1", "taxid": 262004, "species_taxid": 262004, "relation_to_type": "type", "validated": true, "ani": 76.7655, "matched_fragments": 115, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Changchengzhania lutea", "strain": "strain=SM1355", "accession": "GCA_006974145.1", "taxid": 2049305, "species_taxid": 2049305, "relation_to_type": "type", "validated": true, "ani": 76.7557, "matched_fragments": 116, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella endarachnes", "strain": "strain=HL2-2", "accession": "GCA_009741275.1", "taxid": 2681965, "species_taxid": 2681965, "relation_to_type": "type", "validated": true, "ani": 76.7517, "matched_fragments": 120, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivivens marinum", "strain": "strain=MT3-5-12", "accession": "GCA_022662175.1", "taxid": 2913555, "species_taxid": 2913555, "relation_to_type": "type", "validated": true, "ani": 76.7507, "matched_fragments": 105, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gelidibacter algens", "strain": "strain=ACAM 536", "accession": "GCA_001678675.1", "taxid": 49280, "species_taxid": 49280, "relation_to_type": "type", "validated": true, "ani": 76.7475, "matched_fragments": 95, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella helgolandensis", "strain": "strain=Z963", "accession": "GCA_013404085.1", "taxid": 2697010, "species_taxid": 2697010, "relation_to_type": "type", "validated": true, "ani": 76.7247, "matched_fragments": 114, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga algicola", "strain": "strain=Y03", "accession": "GCA_012910715.1", "taxid": 2729136, "species_taxid": 2729136, "relation_to_type": "type", "validated": true, "ani": 76.7168, "matched_fragments": 140, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Snuella sedimenti", "strain": "strain=CAU 1569", "accession": "GCA_016428595.1", "taxid": 2798802, "species_taxid": 2798802, "relation_to_type": "type", "validated": true, "ani": 76.7012, "matched_fragments": 107, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella vidalii", "strain": "strain=HL634", "accession": "GCA_013403955.1", "taxid": 2615024, "species_taxid": 2615024, "relation_to_type": "type", "validated": true, "ani": 76.6507, "matched_fragments": 108, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yeosuana aromativorans", "strain": "strain=JCM 12862", "accession": "GCA_014646655.1", "taxid": 288019, "species_taxid": 288019, "relation_to_type": "type", "validated": true, "ani": 76.6471, "matched_fragments": 121, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella aquatilis", "strain": "strain=SJ7", "accession": "GCA_014270105.1", "taxid": 2762758, "species_taxid": 2762758, "relation_to_type": "type", "validated": true, "ani": 76.6289, "matched_fragments": 71, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella schleiferi", "strain": "strain=Z215", "accession": "GCA_013394655.1", "taxid": 2686078, "species_taxid": 2686078, "relation_to_type": "type", "validated": true, "ani": 76.6185, "matched_fragments": 116, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gelidibacter gilvus", "strain": "strain=IC158", "accession": "GCA_004115975.1", "taxid": 59602, "species_taxid": 59602, "relation_to_type": "type", "validated": true, "ani": 76.6013, "matched_fragments": 91, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens mesophilus", "strain": "strain=JCM 13413", "accession": "GCA_000826645.1", "taxid": 325473, "species_taxid": 325473, "relation_to_type": "type", "validated": true, "ani": 76.5975, "matched_fragments": 155, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamlana crocina", "strain": "strain=HST1-43", "accession": "GCA_012037625.1", "taxid": 393006, "species_taxid": 393006, "relation_to_type": "type", "validated": true, "ani": 76.5651, "matched_fragments": 77, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella psychrotolerans", "strain": "strain=RS-3", "accession": "GCA_000427335.1", "taxid": 1344585, "species_taxid": 1344585, "relation_to_type": "type", "validated": true, "ani": 76.5605, "matched_fragments": 113, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Confluentibacter flavum", "strain": "strain=3B", "accession": "GCA_002843175.1", "taxid": 1909700, "species_taxid": 1909700, "relation_to_type": "type", "validated": true, "ani": 76.5523, "matched_fragments": 111, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella flava", "strain": "strain=KCTC 52348", "accession": "GCA_014243395.1", "taxid": 1884876, "species_taxid": 1884876, "relation_to_type": "type", "validated": true, "ani": 76.509, "matched_fragments": 96, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gelidibacter pelagius", "strain": "strain=DF109", "accession": "GCA_017581925.1", "taxid": 2819985, "species_taxid": 2819985, "relation_to_type": "type", "validated": true, "ani": 76.5049, "matched_fragments": 93, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_013001285.1", "gtdb_species": "s__SHLJ01 sp004283005", "ani": 99.7195, "matched_fragments": 855, "total_fragments": 913, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__SHLJ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.69", "min_intra_species_ani": "99.59", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCA_013001965.1", "gtdb_species": "s__SHLJ01 sp013001965", "ani": 77.5833, "matched_fragments": 242, "total_fragments": 913, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__SHLJ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.22", "min_intra_species_ani": "99.22", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_005047595.1", "gtdb_species": "s__CAU-1491 sp005047595", "ani": 77.2409, "matched_fragments": 157, "total_fragments": 913, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__CAU-1491", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008806375.1", "gtdb_species": "s__Tamlana_A haliotis", 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"gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Meridianimaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.44", "min_intra_species_ani": "97.06", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_003650305.1", "gtdb_species": "s__PRS1 sp003650305", "ani": 76.9797, "matched_fragments": 155, "total_fragments": 913, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__PRS1", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002162685.1", "gtdb_species": "s__Psychroserpens sp002162685", "ani": 76.9264, "matched_fragments": 153, "total_fragments": 913, "gtdb_taxonomy": 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900112595.1", "gtdb_species": "s__Algibacter_B pectinivorans", "ani": 76.8185, "matched_fragments": 117, "total_fragments": 913, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Algibacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002428965.1", "gtdb_species": "s__Jejuia sp002428965", "ani": 76.8154, "matched_fragments": 99, "total_fragments": 913, "gtdb_taxonomy": 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