{ "type": "genome", "identifier": "GCA_013042595.1", "organism": "Flavobacteriaceae bacterium", "title": "Flavobacteriaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Monash University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013042595.1", "bioproject": "PRJNA623061", "biosample": "SAMN14538059", "wgs_master": "JABDPV000000000.1", "refseq_category": "na", "taxid": "1871037", "species_taxid": "1871037", "organism_name": "Flavobacteriaceae bacterium", "infraspecific_name": "", "isolate": "Site_B23", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/11", "asm_name": "ASM1304259v1", "submitter": "Monash University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/042/595/GCA_013042595.1_ASM1304259v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-11", "dateModified": "2020-05-11", "datePublished": "2020-05-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacteriaceae bacterium" ], "sample_taxid": [ "1871037" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Middle Park Beach, Port Phillip Bay site B" ], "sample_host_location_id": [], "data_size": "0.857 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 90.53, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2984535", "Number of Sequences": "84", "Longest Sequences (bp)": "261652", "N50 (bp)": "63256", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.5", "Number of CDSs": "2644", "Average Protein Length": "333.1", "Coding Ratio (%)": "88.5", "Number of rRNAs": "2", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pukyongia salina", "strain": "strain=RR4-38", "accession": "GCA_002966125.1", "taxid": 2094025, "species_taxid": 2094025, "relation_to_type": "type", "validated": true, "ani": 78.702, "matched_fragments": 353, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Constantimarinum furrinae", "strain": "strain=ALE3EI", "accession": "GCA_014295415.1", "taxid": 2562285, "species_taxid": 2562285, "relation_to_type": "type", "validated": true, "ani": 77.1854, "matched_fragments": 136, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Altibacter lentus", "strain": "strain=JLT2010", "accession": "GCA_000746845.1", "taxid": 1223410, "species_taxid": 1223410, "relation_to_type": "type", "validated": true, "ani": 77.0412, "matched_fragments": 98, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteirhabdus pelagi", "strain": "strain=A3-108", "accession": "GCA_016827595.1", "taxid": 2792783, "species_taxid": 2792783, "relation_to_type": "type", "validated": true, "ani": 76.9129, "matched_fragments": 69, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cochleicola gelatinilyticus", "strain": "strain=LPB0005", "accession": "GCA_001637325.1", "taxid": 1763537, "species_taxid": 1763537, "relation_to_type": "type", "validated": true, "ani": 76.788, "matched_fragments": 75, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinirhabdus gelatinilytica", "strain": "strain=DSM 101478", "accession": "GCA_003353425.1", "taxid": 1703343, "species_taxid": 1703343, "relation_to_type": "type", "validated": true, "ani": 76.7768, "matched_fragments": 80, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ulvibacter litoralis", "strain": "strain=DSM 16195", "accession": "GCA_900102055.1", "taxid": 227084, "species_taxid": 227084, "relation_to_type": "type", "validated": true, "ani": 76.7439, "matched_fragments": 73, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ulvibacter litoralis", "strain": "strain=KCTC 12104", "accession": "GCA_014651275.1", "taxid": 227084, "species_taxid": 227084, "relation_to_type": "type", "validated": true, "ani": 76.7393, "matched_fragments": 75, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita lipolytica", "strain": "strain=Y10-2", "accession": "GCA_007997135.1", "taxid": 153267, "species_taxid": 153267, "relation_to_type": "type", "validated": true, "ani": 76.6836, "matched_fragments": 61, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marixanthomonas ophiurae", "strain": "strain=KMM 3046", "accession": "GCA_003413745.1", "taxid": 387659, "species_taxid": 387659, "relation_to_type": "type", "validated": true, "ani": 76.4271, "matched_fragments": 87, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita aquimaris", "strain": "strain=D-24", "accession": "GCA_001573155.1", "taxid": 1548749, "species_taxid": 1548749, "relation_to_type": "type", "validated": true, "ani": 76.3211, "matched_fragments": 93, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 90.53, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_013043685.1", "gtdb_species": "s__Pukyongia sp013043685", "ani": 99.8255, "matched_fragments": 914, 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Pukyongia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905479745.1", "gtdb_species": "s__Pukyongia sp905479745", "ani": 78.4149, "matched_fragments": 315, "total_fragments": 956, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Pukyongia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014295415.1", "gtdb_species": "s__Altibacter sp014295415", "ani": 77.1854, "matched_fragments": 136, "total_fragments": 956, "gtdb_taxonomy": 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