{ "type": "genome", "identifier": "GCA_013043175.1", "organism": "Flavobacteriaceae bacterium", "title": "Flavobacteriaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Monash University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013043175.1", "bioproject": "PRJNA623061", "biosample": "SAMN14538029", "wgs_master": "JABDOR000000000.1", "refseq_category": "na", "taxid": "1871037", "species_taxid": "1871037", "organism_name": "Flavobacteriaceae bacterium", "infraspecific_name": "", "isolate": "Site_A35", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/11", "asm_name": "ASM1304317v1", "submitter": "Monash University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/043/175/GCA_013043175.1_ASM1304317v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-11", "dateModified": "2020-05-11", "datePublished": "2020-05-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacteriaceae bacterium" ], "sample_taxid": [ "1871037" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Middle Park Beach, Port Phillip Bay site A" ], "sample_host_location_id": [], "data_size": "0.755 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.52, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2618995", "Number of Sequences": "467", "Longest Sequences (bp)": "25343", "N50 (bp)": "7244", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.6", "Number of CDSs": "1946", "Average Protein Length": "304.6", "Coding Ratio (%)": "67.9", "Number of rRNAs": "2", "Number of tRNAs": "27", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Muriicola soli", "strain": "strain=MMS17-SY002", "accession": "GCA_004139715.1", "taxid": 2507538, "species_taxid": 2507538, "relation_to_type": "type", "validated": true, "ani": 80.4858, "matched_fragments": 443, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muriicola marianensis", "strain": "strain=CGMCC 1.12606", "accession": "GCA_014638095.1", "taxid": 1324801, "species_taxid": 1324801, "relation_to_type": "type", "validated": true, "ani": 77.679, "matched_fragments": 223, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muriicola jejuensis", "strain": "strain=KCTC 22299", "accession": "GCA_010671595.1", "taxid": 504488, "species_taxid": 504488, "relation_to_type": "type", "validated": true, "ani": 77.5473, "matched_fragments": 220, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Poritiphilus flavus", "strain": "strain=R33", "accession": "GCA_009901585.1", "taxid": 2697053, "species_taxid": 2697053, "relation_to_type": "type", "validated": true, "ani": 76.8252, "matched_fragments": 75, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zeaxanthinibacter enoshimensis", "strain": "strain=DSM 18435", "accession": "GCA_004362865.1", "taxid": 392009, "species_taxid": 392009, "relation_to_type": "type", "validated": true, "ani": 76.6349, "matched_fragments": 59, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eudoraea adriatica", "strain": "strain=DSM 19308", "accession": "GCA_000382125.1", "taxid": 446681, "species_taxid": 446681, "relation_to_type": "type", "validated": true, "ani": 76.6078, "matched_fragments": 74, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda nanhaiensis", "strain": "strain=SM1704", "accession": "GCA_003382275.1", "taxid": 2292706, "species_taxid": 2292706, "relation_to_type": "type", "validated": true, "ani": 76.0483, "matched_fragments": 51, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter algicola", "strain": "strain=TG409", "accession": "GCA_000733925.1", "taxid": 616991, "species_taxid": 616991, "relation_to_type": "type", "validated": true, "ani": 75.9964, "matched_fragments": 53, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 0.52, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_013042255.1", "gtdb_species": "s__Muriicola sp013042255", "ani": 98.519, "matched_fragments": 379, "total_fragments": 620, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muriicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.63", "min_intra_species_ani": "98.55", "mean_intra_species_af": "0.78", "min_intra_species_af": "0.75", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCA_013042315.1", "gtdb_species": "s__Muriicola sp013042315", "ani": 81.6763, "matched_fragments": 366, "total_fragments": 620, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muriicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.31", "min_intra_species_ani": "99.31", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004139715.1", "gtdb_species": "s__Muriicola sp004139715", "ani": 80.4858, 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"Muriicola", "sp013042255" ], "_meo": [ { "id": "MEO_0000192", "label": "beach sand" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }