{ "type": "genome", "identifier": "GCA_013043245.1", "organism": "Gemmatimonadota bacterium", "title": "Gemmatimonadota bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Monash University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013043245.1", "bioproject": "PRJNA623061", "biosample": "SAMN14538031", "wgs_master": "JABDOT000000000.1", "refseq_category": "na", "taxid": "2026742", "species_taxid": "2026742", "organism_name": "Gemmatimonadota bacterium", "infraspecific_name": "", "isolate": "Site_A37", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/11", "asm_name": "ASM1304324v1", "submitter": "Monash University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/043/245/GCA_013043245.1_ASM1304324v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-11", "dateModified": "2020-05-11", "datePublished": "2020-05-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Gemmatimonadota bacterium" ], "sample_taxid": [ "2026742" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Middle Park Beach, Port Phillip Bay site A" ], "sample_host_location_id": [], "data_size": "0.599 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 69.1, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2132115", "Number of Sequences": "498", "Longest Sequences (bp)": "17091", "N50 (bp)": "4767", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.0", "Number of CDSs": "1483", "Average Protein Length": "312.9", "Coding Ratio (%)": "65.3", "Number of rRNAs": "0", "Number of tRNAs": "8", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 69.1, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_013002885.1", "gtdb_species": "s__UBA2589 sp013002885", "ani": 98.9614, "matched_fragments": 338, "total_fragments": 421, "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__UBA2589", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.00", "min_intra_species_ani": "99.00", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_015492755.1", 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"d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__SZUA-318", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Gemmatimonadota", "c__Gemmatimonadetes", "o__Longimicrobiales", "f__UBA6960", "g__UBA2589", "s__UBA2589 sp013002885" ], "_genome_taxon": [ "Gemmatimonadota", "bacterium", "d__Bacteria", "p__Gemmatimonadota", "c__Gemmatimonadetes", "o__Longimicrobiales", "f__UBA6960", "g__UBA2589", "s__UBA2589 sp013002885", "Bacteria", "Gemmatimonadota", "Gemmatimonadetes", "Longimicrobiales", "UBA6960", "UBA2589", "UBA2589", "sp013002885" ], "_meo": [ { "id": "MEO_0000192", "label": "beach sand" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }