{ "type": "genome", "identifier": "GCA_013043825.1", "organism": "Flavobacteriaceae bacterium", "title": "Flavobacteriaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Monash University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013043825.1", "bioproject": "PRJNA623061", "biosample": "SAMN14537998", "wgs_master": "JABDNM000000000.1", "refseq_category": "na", "taxid": "1871037", "species_taxid": "1871037", "organism_name": "Flavobacteriaceae bacterium", "infraspecific_name": "", "isolate": "Site_A4", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/11", "asm_name": "ASM1304382v1", "submitter": "Monash University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/043/825/GCA_013043825.1_ASM1304382v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-11", "dateModified": "2020-05-11", "datePublished": "2020-05-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacteriaceae bacterium" ], "sample_taxid": [ "1871037" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Middle Park Beach, Port Phillip Bay site A" ], "sample_host_location_id": [], "data_size": "0.748 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 84.72, "contamination": 16.44, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2592470", "Number of Sequences": "257", "Longest Sequences (bp)": "49410", "N50 (bp)": "16939", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.7", "Number of CDSs": "2054", "Average Protein Length": "331.6", "Coding Ratio (%)": "78.8", "Number of rRNAs": "0", "Number of tRNAs": "23", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pukyongia salina", "strain": "strain=RR4-38", "accession": "GCA_002966125.1", "taxid": 2094025, "species_taxid": 2094025, "relation_to_type": "type", "validated": true, "ani": 76.9428, "matched_fragments": 92, "total_fragments": 726, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Altibacter lentus", "strain": "strain=JLT2010", "accession": "GCA_000746845.1", "taxid": 1223410, "species_taxid": 1223410, "relation_to_type": "type", "validated": true, "ani": 76.6977, "matched_fragments": 96, "total_fragments": 726, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Constantimarinum furrinae", "strain": "strain=ALE3EI", "accession": "GCA_014295415.1", "taxid": 2562285, "species_taxid": 2562285, "relation_to_type": "type", "validated": true, "ani": 76.6709, "matched_fragments": 85, "total_fragments": 726, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita vladivostokensis", "strain": "strain=KMM 3516", "accession": "GCA_000952855.1", "taxid": 171194, "species_taxid": 171194, "relation_to_type": "type", "validated": true, "ani": 76.5085, "matched_fragments": 52, "total_fragments": 726, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ulvibacter litoralis", "strain": "strain=KCTC 12104", "accession": "GCA_014651275.1", "taxid": 227084, "species_taxid": 227084, "relation_to_type": "type", "validated": true, "ani": 76.4884, "matched_fragments": 59, "total_fragments": 726, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ulvibacter litoralis", "strain": "strain=DSM 16195", "accession": "GCA_900102055.1", "taxid": 227084, "species_taxid": 227084, "relation_to_type": "type", "validated": true, "ani": 76.4884, "matched_fragments": 59, "total_fragments": 726, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita echinoideorum", "strain": "strain=JCM30378", "accession": "GCA_018476645.1", "taxid": 1549647, "species_taxid": 1549647, "relation_to_type": "type", "validated": true, "ani": 76.3518, "matched_fragments": 51, "total_fragments": 726, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita lipolytica", "strain": "strain=Y10-2", "accession": "GCA_007997135.1", "taxid": 153267, "species_taxid": 153267, "relation_to_type": "type", "validated": true, "ani": 76.2063, "matched_fragments": 53, "total_fragments": 726, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marixanthomonas spongiae", "strain": "strain=HN-E44", "accession": "GCA_003095375.1", "taxid": 2174845, "species_taxid": 2174845, "relation_to_type": "type", 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1, "status": "conclusive" }, { "accession": "GCA_009827225.1", "gtdb_species": "s__SMXJ01 sp009827225", "ani": 77.3683, "matched_fragments": 132, "total_fragments": 726, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__SMXJ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004356305.1", "gtdb_species": "s__SMXJ01 sp004356305", "ani": 77.0579, "matched_fragments": 116, "total_fragments": 726, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__SMXJ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.46", "min_intra_species_ani": "98.22", "mean_intra_species_af": "0.69", "min_intra_species_af": "0.67", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_008501705.1", "gtdb_species": "s__Pukyongia sp008501705", "ani": 76.8988, "matched_fragments": 80, "total_fragments": 726, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Pukyongia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000746845.1", "gtdb_species": "s__Altibacter lentus", "ani": 76.7206, "matched_fragments": 95, "total_fragments": 726, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Altibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002813135.1", "gtdb_species": "s__Altibacter sp002813135", "ani": 76.6127, 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726, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Altibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.86", "min_intra_species_ani": "99.86", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002631855.1", "gtdb_species": "s__Marixanthomonas sp002631855", "ani": 76.4123, "matched_fragments": 67, "total_fragments": 726, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Marixanthomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003095375.1", "gtdb_species": "s__Marixanthomonas sp003095375", "ani": 76.2054, "matched_fragments": 56, "total_fragments": 726, "gtdb_taxonomy": 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