{ "type": "genome", "identifier": "GCA_013112675.1", "organism": "Chloroflexota bacterium", "title": "Chloroflexota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "KAUST", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013112675.1", "bioproject": "PRJNA592266", "biosample": "SAMN13420033", "wgs_master": "JABFGD000000000.1", "refseq_category": "na", "taxid": "2026724", "species_taxid": "2026724", "organism_name": "Chloroflexota bacterium", "infraspecific_name": "", "isolate": "CFX12", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/17", "asm_name": "ASM1311267v1", "submitter": "KAUST", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/112/675/GCA_013112675.1_ASM1311267v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-17", "dateModified": "2020-05-17", "datePublished": "2020-05-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Chloroflexota bacterium" ], "sample_taxid": [ "2026724" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Saudi Arabia: KAUST" ], "sample_host_location_id": [], "data_size": "1.186 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 89.78, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4282700", "Number of Sequences": "3", "Longest Sequences (bp)": "2170531", "N50 (bp)": "2170531", "Gap Ratio (%)": "0.000163", "GCcontent (%)": "62.4", "Number of CDSs": "5666", "Average Protein Length": "210.6", "Coding Ratio (%)": "83.6", "Number of rRNAs": "6", "Number of tRNAs": "49", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aggregatilinea lenta", "strain": "strain=MO-CFX2", "accession": "GCA_003569045.1", "taxid": 913108, "species_taxid": 913108, "relation_to_type": "type", "validated": true, "ani": 75.8188, "matched_fragments": 132, "total_fragments": 1426, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter mirabilis", "strain": "strain=FWC 38", "accession": "GCA_002749615.1", "taxid": 69666, "species_taxid": 69666, "relation_to_type": "type", "validated": true, "ani": 75.1932, "matched_fragments": 55, "total_fragments": 1426, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sporichthya polymorpha", "strain": "strain=DSM 43042", "accession": "GCA_000384115.1", "taxid": 35751, "species_taxid": 35751, "relation_to_type": "type", "validated": true, "ani": 74.9572, "matched_fragments": 54, "total_fragments": 1426, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora aureofaciens", "strain": "strain=NRRL 2209", "accession": "GCA_000978515.1", "taxid": 1894, "species_taxid": 1894, "relation_to_type": "type", "validated": true, "ani": 74.9372, "matched_fragments": 71, "total_fragments": 1426, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora aureofaciens", "strain": "strain=ATCC 10762", "accession": "GCA_001188955.3", "taxid": 1894, "species_taxid": 1894, "relation_to_type": "type", "validated": true, "ani": 74.912, "matched_fragments": 79, "total_fragments": 1426, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum rugosum", "strain": "strain=IMMIB AFH-6", "accession": "GCA_017876155.1", "taxid": 416170, "species_taxid": 416170, "relation_to_type": "type", "validated": true, "ani": 74.8864, "matched_fragments": 69, "total_fragments": 1426, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes piscinae", "strain": "strain=DSM 19946", "accession": "GCA_003258855.1", "taxid": 444923, "species_taxid": 444923, "relation_to_type": "type", "validated": true, "ani": 74.8778, "matched_fragments": 50, "total_fragments": 1426, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera phenylacetica", "strain": "strain=B4P", "accession": "GCA_000310225.1", "taxid": 164400, "species_taxid": 164400, "relation_to_type": "type", "validated": true, "ani": 74.8482, "matched_fragments": 51, "total_fragments": 1426, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum formosense", "strain": "strain=CC-NFb-7", "accession": "GCA_013340925.1", "taxid": 861533, "species_taxid": 861533, "relation_to_type": "type", "validated": true, "ani": 74.8052, "matched_fragments": 64, "total_fragments": 1426, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum picis", "strain": "strain=IMMIB TAR-3", "accession": "GCA_017876115.1", "taxid": 488438, "species_taxid": 488438, "relation_to_type": "type", "validated": true, "ani": 74.7973, "matched_fragments": 74, "total_fragments": 1426, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium isbiliense", "strain": "strain=DSM 17168", "accession": "GCA_022179325.1", "taxid": 315478, "species_taxid": 315478, "relation_to_type": "type", "validated": true, "ani": 74.7926, "matched_fragments": 72, "total_fragments": 1426, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas oryzicola", "strain": "strain=KCTC 22478", "accession": "GCA_012163135.1", "taxid": 535904, "species_taxid": 535904, "relation_to_type": "type", "validated": true, "ani": 74.7343, "matched_fragments": 65, "total_fragments": 1426, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum agricola", "strain": "strain=CC-HIH038", "accession": "GCA_017876095.1", "taxid": 1720247, "species_taxid": 1720247, "relation_to_type": "type", "validated": true, "ani": 74.6757, "matched_fragments": 93, "total_fragments": 1426, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 89.78, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_001567485.1", "gtdb_species": "s__OLB13 sp001567485", "ani": 98.8866, "matched_fragments": 1247, "total_fragments": 1426, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Aggregatilineales;f__A4b;g__OLB13", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.21", "min_intra_species_ani": "98.90", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 9, "status": "conclusive" }, { "accession": "GCA_016716525.1", "gtdb_species": "s__OLB13 sp016716525", "ani": 84.2632, "matched_fragments": 1187, "total_fragments": 1426, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Aggregatilineales;f__A4b;g__OLB13", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016712885.1", "gtdb_species": "s__OLB13 sp016712885", "ani": 77.2075, "matched_fragments": 348, "total_fragments": 1426, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Aggregatilineales;f__A4b;g__OLB13", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013360465.1", "gtdb_species": "s__OLB15 sp013360465", "ani": 76.6116, "matched_fragments": 160, "total_fragments": 1426, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Aggregatilineales;f__A4b;g__OLB15", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014879865.1", "gtdb_species": "s__OLB15 sp014879865", "ani": 76.3791, "matched_fragments": 137, "total_fragments": 1426, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Aggregatilineales;f__A4b;g__OLB15", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016717205.1", "gtdb_species": "s__OLB15 sp016717205", "ani": 76.3704, "matched_fragments": 170, "total_fragments": 1426, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Aggregatilineales;f__A4b;g__OLB15", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.47", "min_intra_species_ani": "97.38", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_903864435.1", "gtdb_species": "s__CFX2 sp903864435", "ani": 75.9545, "matched_fragments": 88, "total_fragments": 1426, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Aggregatilineales;f__A4b;g__CFX2", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016789005.1", "gtdb_species": "s__OLB15 sp016789005", "ani": 75.909, "matched_fragments": 121, "total_fragments": 1426, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Aggregatilineales;f__A4b;g__OLB15", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011367385.1", "gtdb_species": "s__SpSt-583 sp011367385", "ani": 75.6416, "matched_fragments": 61, "total_fragments": 1426, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__UBA6663;g__SpSt-583", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018056405.1", "gtdb_species": "s__UBA2029 sp018056405", "ani": 75.4772, "matched_fragments": 60, "total_fragments": 1426, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Aggregatilineales;f__Aggregatilineaceae;g__UBA2029", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002385675.1", "gtdb_species": "s__UBA3940 sp002385675", "ani": 75.4301, "matched_fragments": 64, "total_fragments": 1426, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Aggregatilineales;f__UBA3940;g__UBA3940", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.28", "min_intra_species_ani": "99.28", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018432315.1", "gtdb_species": "s__LM3-B42 sp018432315", "ani": 75.38, "matched_fragments": 126, "total_fragments": 1426, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Aggregatilineales;f__Aggregatilineaceae;g__LM3-B42", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Chloroflexota", "c__Anaerolineae", "o__Aggregatilineales", "f__Phototrophicaceae", "g__Flexicrinis", "s__Flexicrinis sp001567485" ], "_genome_taxon": [ "Chloroflexota", "bacterium", "d__Bacteria", "p__Chloroflexota", "c__Anaerolineae", "o__Aggregatilineales", "f__Phototrophicaceae", "g__Flexicrinis", "s__Flexicrinis sp001567485", "Bacteria", "Chloroflexota", "Anaerolineae", "Aggregatilineales", "Phototrophicaceae", "Flexicrinis", "Flexicrinis", "sp001567485" ], "_meo": [ { "id": "MEO_0000119", "label": "bioreactor" } ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }