{ "type": "genome", "identifier": "GCA_013138905.1", "organism": "Methanosarcinales archaeon", "title": "Methanosarcinales archaeon", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "GNS Science", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013138905.1", "bioproject": "PRJNA562730", "biosample": "SAMN13287976", "wgs_master": "WTBU00000000.1", "refseq_category": "na", "taxid": "2250255", "species_taxid": "2250255", "organism_name": "Methanosarcinales archaeon", "infraspecific_name": "", "isolate": "GLR651", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/21", "asm_name": "ASM1313890v1", "submitter": "GNS Science", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/138/905/GCA_013138905.1_ASM1313890v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-21", "dateModified": "2020-05-21", "datePublished": "2020-05-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Methanosarcinales archaeon" ], "sample_taxid": [ "2250255" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Zealand: Hikurangi Margin" ], "sample_host_location_id": [], "data_size": "0.253 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 49.79, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "872686", "Number of Sequences": "204", "Longest Sequences (bp)": "13656", "N50 (bp)": "4283", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "51.3", "Number of CDSs": "731", "Average Protein Length": "247.1", "Coding Ratio (%)": "62.1", "Number of rRNAs": "0", "Number of tRNAs": "17", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 49.79, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_013572355.1", "gtdb_species": "s__Methanogaster sp013572355", "ani": 91.7307, "matched_fragments": 158, "total_fragments": 188, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanogasteraceae;g__Methanogaster", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002503595.1", "gtdb_species": "s__Methanogaster sp002503595", "ani": 90.8269, "matched_fragments": 164, "total_fragments": 188, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanogasteraceae;g__Methanogaster", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003194445.1", "gtdb_species": "s__Methanogaster sp003194445", "ani": 88.7449, "matched_fragments": 165, "total_fragments": 188, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanogasteraceae;g__Methanogaster", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003661105.1", "gtdb_species": "s__Methanogaster sp003661105", "ani": 88.2221, "matched_fragments": 140, "total_fragments": 188, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanogasteraceae;g__Methanogaster", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002506015.1", "gtdb_species": "s__Methanogaster sp002506015", "ani": 80.3364, "matched_fragments": 94, "total_fragments": 188, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanogasteraceae;g__Methanogaster", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003601535.1", "gtdb_species": "s__Methanogaster sp003601535", "ani": 79.1859, "matched_fragments": 93, "total_fragments": 188, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanogasteraceae;g__Methanogaster", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.015, "cell_length": 0.122, "doubling_h": 1.067, "growth_tmp": 35.781, "optimum_tmp": 36.373, "optimum_ph": 7.171, "genome_size": 3241894.319, "gc_content": 42.264, "coding_genes": 2973.655, "rRNA16S_genes": 2.562, "tRNA_genes": 52.005, "gram_stain": 0.066, "sporulation": 0.0, "motility": 0.064, "range_salinity": 0.75, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 0.8, "thermophilic_range_tmp": 0.2, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.108, "coccus_cell_shape": 0.891, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Archaea", "p__Halobacteriota", "c__Methanosarcinia", "o__Methanosarcinales", "f__Methanogasteraceae", "g__Methanogaster", "s__" ], "_genome_taxon": [ "Methanosarcinales", "archaeon", "d__Archaea", "p__Halobacteriota", "c__Methanosarcinia", "o__Methanosarcinales", "f__Methanogasteraceae", "g__Methanogaster", "s__", "Archaea", "Halobacteriota", "Methanosarcinia", "Methanosarcinales", "Methanogasteraceae", "Methanogaster", "s", "", "" ], "_meo": [ { "id": "MEO_0000040", "label": "marine sediment" }, { "id": "MEO_0001170", "label": "cold seep" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }