{
    "type": "genome",
    "identifier": "GCA_013139205.1",
    "organism": "Nitrosomonadaceae bacterium",
    "title": "Nitrosomonadaceae bacterium",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "GNS Science",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_013139205.1",
        "bioproject": "PRJNA562730",
        "biosample": "SAMN13287961",
        "wgs_master": "WTBF00000000.1",
        "refseq_category": "na",
        "taxid": "2026767",
        "species_taxid": "2026767",
        "organism_name": "Nitrosomonadaceae bacterium",
        "infraspecific_name": "",
        "isolate": "GLR3",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/05/21",
        "asm_name": "ASM1313920v1",
        "submitter": "GNS Science",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/139/205/GCA_013139205.1_ASM1313920v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-05-21",
    "dateModified": "2020-05-21",
    "datePublished": "2020-05-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nitrosomonadaceae bacterium"
        ],
        "sample_taxid": [
            "2026767"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "New Zealand: Hikurangi Margin"
        ],
        "sample_host_location_id": [],
        "data_size": "0.250 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 66.92,
        "contamination": 8.33,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "850144",
        "Number of Sequences": "239",
        "Longest Sequences (bp)": "10737",
        "N50 (bp)": "3499",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "44.0",
        "Number of CDSs": "718",
        "Average Protein Length": "234.9",
        "Coding Ratio (%)": "59.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "20",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 66.92,
            "contamination": 8.33,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_003230615.1",
                "gtdb_species": "s__GCA-2721545 sp003230615",
                "ani": 97.3477,
                "matched_fragments": 107,
                "total_fragments": 157,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__GCA-2721545",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.47",
                "min_intra_species_ani": "97.47",
                "mean_intra_species_af": "0.74",
                "min_intra_species_af": "0.74",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_004356775.1",
                "gtdb_species": "s__GCA-2721545 sp004356775",
                "ani": 85.1829,
                "matched_fragments": 105,
                "total_fragments": 157,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__GCA-2721545",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.38",
                "min_intra_species_ani": "99.38",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_004525885.1",
                "gtdb_species": "s__GCA-2721545 sp004525885",
                "ani": 80.9472,
                "matched_fragments": 91,
                "total_fragments": 157,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__GCA-2721545",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.015,
        "cell_length": 0.142,
        "doubling_h": 0.74,
        "growth_tmp": 27.5,
        "optimum_tmp": 27.2,
        "optimum_ph": 7.5,
        "genome_size": 3186710.827,
        "gc_content": 49.014,
        "coding_genes": 2827.928,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 42.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.8,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 1.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Nitrosomonadaceae",
        "g__GCA-2721545",
        "s__GCA-2721545 sp003230615"
    ],
    "_genome_taxon": [
        "Nitrosomonadaceae",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Nitrosomonadaceae",
        "g__GCA-2721545",
        "s__GCA-2721545 sp003230615",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Nitrosomonadaceae",
        "GCA-2721545",
        "GCA-2721545",
        "sp003230615"
    ],
    "_meo": [
        {
            "id": "MEO_0000040",
            "label": "marine sediment"
        },
        {
            "id": "MEO_0001170",
            "label": "cold seep"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}