{ "type": "genome", "identifier": "GCA_013139255.1", "organism": "Flavobacteriaceae bacterium", "title": "Flavobacteriaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "GNS Science", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013139255.1", "bioproject": "PRJNA562730", "biosample": "SAMN13287960", "wgs_master": "WTBE00000000.1", "refseq_category": "na", "taxid": "1871037", "species_taxid": "1871037", "organism_name": "Flavobacteriaceae bacterium", "infraspecific_name": "", "isolate": "GLR28", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/21", "asm_name": "ASM1313925v1", "submitter": "GNS Science", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/139/255/GCA_013139255.1_ASM1313925v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-21", "dateModified": "2020-05-21", "datePublished": "2020-05-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacteriaceae bacterium" ], "sample_taxid": [ "1871037" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Zealand: Hikurangi Margin" ], "sample_host_location_id": [], "data_size": "0.525 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 80.73, "contamination": 1.98, "strain_heterogeneity": 60.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1881327", "Number of Sequences": "395", "Longest Sequences (bp)": "23477", "N50 (bp)": "5058", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "30.2", "Number of CDSs": "1354", "Average Protein Length": "304.6", "Coding Ratio (%)": "65.8", "Number of rRNAs": "1", "Number of tRNAs": "21", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aureibaculum luteum", "strain": "strain=SM1352", "accession": "GCA_003449015.1", "taxid": 1548456, "species_taxid": 1548456, "relation_to_type": "type", "validated": true, "ani": 77.0477, "matched_fragments": 73, "total_fragments": 420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureibaculum marinum", "strain": "strain=BH-SD17", "accession": "GCA_003813905.1", "taxid": 2487930, "species_taxid": 2487930, "relation_to_type": "type", "validated": true, "ani": 76.9473, "matched_fragments": 72, "total_fragments": 420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureibaculum algae", "strain": "strain=10Alg 115", "accession": "GCA_006065315.1", "taxid": 2584122, "species_taxid": 2584122, "relation_to_type": "type", "validated": true, "ani": 76.908, "matched_fragments": 83, "total_fragments": 420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter profundi", "strain": "strain=LP1", "accession": "GCA_001543325.1", "taxid": 1622118, "species_taxid": 1622118, "relation_to_type": "type", "validated": true, "ani": 76.8813, "matched_fragments": 90, "total_fragments": 420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter oceani", "strain": "strain=JCM30924", "accession": "GCA_003426875.1", "taxid": 1853311, "species_taxid": 1853311, "relation_to_type": "type", "validated": true, "ani": 76.8669, "matched_fragments": 92, "total_fragments": 420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureibaculum flavum", "strain": "strain=A20", "accession": "GCA_016406085.1", "taxid": 2795986, "species_taxid": 2795986, "relation_to_type": "type", "validated": true, "ani": 76.822, "matched_fragments": 70, "total_fragments": 420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Urechidicola croceus", "strain": "strain=LPB0138", "accession": "GCA_001761325.1", "taxid": 1850246, "species_taxid": 1850246, "relation_to_type": "type", "validated": true, "ani": 76.81, "matched_fragments": 63, "total_fragments": 420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter septentrionalilitoris", "strain": "strain=ANORD1", "accession": "GCA_009832745.1", "taxid": 2494657, "species_taxid": 2494657, "relation_to_type": "type", "validated": true, "ani": 76.783, "matched_fragments": 67, "total_fragments": 420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter oricola", "strain": "strain=DSM 24956", "accession": "GCA_900106565.1", "taxid": 762486, "species_taxid": 762486, "relation_to_type": "type", "validated": true, "ani": 76.752, "matched_fragments": 84, "total_fragments": 420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter citreus", "strain": "strain=1KV19", "accession": "GCA_003260195.1", "taxid": 2138210, "species_taxid": 2138210, "relation_to_type": "type", "validated": true, "ani": 76.7302, "matched_fragments": 89, "total_fragments": 420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter dokdonensis", "strain": "strain=KCTC 12392", "accession": "GCA_024362345.1", "taxid": 326329, "species_taxid": 326329, "relation_to_type": "type", "validated": true, "ani": 76.5853, "matched_fragments": 69, "total_fragments": 420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella litoriviva", "strain": "strain=KMM6491", "accession": "GCA_013249065.1", "taxid": 1220182, "species_taxid": 1220182, "relation_to_type": "type", "validated": true, "ani": 76.5784, "matched_fragments": 50, "total_fragments": 420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter glomeratus", "strain": "strain=ACAM 171", "accession": "GCA_007997115.1", "taxid": 102, "species_taxid": 102, "relation_to_type": "type", "validated": true, "ani": 76.5454, "matched_fragments": 61, "total_fragments": 420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter glomeratus", "strain": "strain=ATCC 43844", "accession": "GCA_002954665.1", "taxid": 102, "species_taxid": 102, "relation_to_type": "type", "validated": true, "ani": 76.5114, "matched_fragments": 62, "total_fragments": 420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum haliotis", "strain": "strain=KCTC 52419", "accession": "GCA_025215075.1", "taxid": 1888914, "species_taxid": 1888914, "relation_to_type": "type", "validated": true, "ani": 76.4529, "matched_fragments": 58, "total_fragments": 420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter haliotis", "strain": "strain=RA4-7", "accession": "GCA_002201315.1", "taxid": 1888915, "species_taxid": 1888915, "relation_to_type": "type", "validated": true, "ani": 76.4256, "matched_fragments": 56, "total_fragments": 420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter haliotis", "strain": "strain=KCTC 52418", "accession": "GCA_014784055.1", "taxid": 1888915, "species_taxid": 1888915, "relation_to_type": "type", "validated": true, "ani": 76.4208, "matched_fragments": 55, "total_fragments": 420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter pectinis", "strain": "strain=L12M9", "accession": "GCA_014352875.1", "taxid": 2738844, "species_taxid": 2738844, "relation_to_type": "type", "validated": true, "ani": 76.3794, "matched_fragments": 67, "total_fragments": 420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter porphyrae", "strain": "strain=NBRC 108759", "accession": "GCA_002954685.1", "taxid": 1137780, "species_taxid": 1137780, "relation_to_type": "type", "validated": true, "ani": 76.3186, "matched_fragments": 71, "total_fragments": 420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter undariae", "strain": "strain=KCTC 42175", "accession": "GCA_024918935.1", "taxid": 1574269, "species_taxid": 1574269, "relation_to_type": "type", "validated": true, "ani": 76.2191, "matched_fragments": 65, "total_fragments": 420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter porphyrae", "strain": "strain=LMG 26671", "accession": "GCA_020532745.1", "taxid": 1137780, "species_taxid": 1137780, "relation_to_type": "type", "validated": true, "ani": 76.1865, "matched_fragments": 70, "total_fragments": 420, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 80.73, "contamination": 1.98, "strain_heterogeneity": 60.0 }, "gtdb_result": [ { 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