{
    "type": "genome",
    "identifier": "GCA_013139265.1",
    "organism": "Myxococcales bacterium",
    "title": "Myxococcales bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "GNS Science",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_013139265.1",
        "bioproject": "PRJNA562730",
        "biosample": "SAMN13287959",
        "wgs_master": "WTBD00000000.1",
        "refseq_category": "na",
        "taxid": "2026763",
        "species_taxid": "2026763",
        "organism_name": "Myxococcales bacterium",
        "infraspecific_name": "",
        "isolate": "GLR187",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/05/21",
        "asm_name": "ASM1313926v1",
        "submitter": "GNS Science",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/139/265/GCA_013139265.1_ASM1313926v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-05-21",
    "dateModified": "2020-05-21",
    "datePublished": "2020-05-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Myxococcales bacterium"
        ],
        "sample_taxid": [
            "2026763"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "New Zealand: Hikurangi Margin"
        ],
        "sample_host_location_id": [],
        "data_size": "0.838 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 83.33,
        "contamination": 4.69,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2967034",
        "Number of Sequences": "386",
        "Longest Sequences (bp)": "43894",
        "N50 (bp)": "9777",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "63.2",
        "Number of CDSs": "2389",
        "Average Protein Length": "327.9",
        "Coding Ratio (%)": "79.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "26",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Sandaracinus amylolyticus",
                "strain": "strain=DSM 53668",
                "accession": "GCA_000737325.2",
                "taxid": 927083,
                "species_taxid": 927083,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 118,
                "total_fragments": 797,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polyangium aurulentum",
                "strain": "strain=SDU3-1",
                "accession": "GCA_005144635.2",
                "taxid": 2567896,
                "species_taxid": 2567896,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.1498,
                "matched_fragments": 66,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polyangium fumosum",
                "strain": "strain=DSM 14668",
                "accession": "GCA_005144585.1",
                "taxid": 889272,
                "species_taxid": 889272,
                "relation_to_type": "neotype",
                "validated": true,
                "ani": 75.111,
                "matched_fragments": 75,
                "total_fragments": 797,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Labilithrix luteola",
                "strain": "strain=DSM 27648",
                "accession": "GCA_001263205.1",
                "taxid": 1391654,
                "species_taxid": 1391654,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.1062,
                "matched_fragments": 62,
                "total_fragments": 797,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polyangium spumosum",
                "strain": "strain=DSM 14734",
                "accession": "GCA_009649845.1",
                "taxid": 889282,
                "species_taxid": 889282,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0244,
                "matched_fragments": 78,
                "total_fragments": 797,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 83.33,
            "contamination": 4.69,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_003647035.1",
                "gtdb_species": "s__SG8-38 sp003647035",
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                "matched_fragments": 593,
                "total_fragments": 797,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__SG8-38;g__SG8-38",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.70",
                "min_intra_species_ani": "96.70",
                "mean_intra_species_af": "0.74",
                "min_intra_species_af": "0.74",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_004283055.1",
                "gtdb_species": "s__SG8-38 sp004283055",
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                "matched_fragments": 398,
                "total_fragments": 797,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__SG8-38;g__SG8-38",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.78",
                "min_intra_species_ani": "99.72",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_013002645.1",
                "gtdb_species": "s__SG8-38 sp013002645",
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                "matched_fragments": 306,
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                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__SG8-38;g__SG8-38",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001303415.1",
                "gtdb_species": "s__SG8-38 sp001303415",
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                "matched_fragments": 270,
                "total_fragments": 797,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__SG8-38;g__SG8-38",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012744445.1",
                "gtdb_species": "s__JAAYBZ01 sp012744445",
                "ani": 76.2893,
                "matched_fragments": 90,
                "total_fragments": 797,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__SG8-38;g__JAAYBZ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016706685.1",
                "gtdb_species": "s__JADJJE01 sp016706685",
                "ani": 75.9576,
                "matched_fragments": 83,
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                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__SG8-38;g__JADJJE01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.15",
                "min_intra_species_ani": "99.06",
                "mean_intra_species_af": "0.93",
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                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_002699025.1",
                "gtdb_species": "s__GCA-2699025 sp002699025",
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                "matched_fragments": 123,
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                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__SG8-38;g__GCA-2699025",
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                "mean_intra_species_ani": "99.90",
                "min_intra_species_ani": "99.85",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_013151775.1",
                "gtdb_species": "s__JAADHO01 sp013151775",
                "ani": 75.7098,
                "matched_fragments": 73,
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                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__SG8-38;g__JAADHO01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_000737325.1",
                "gtdb_species": "s__Sandaracinus amylolyticus",
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                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__Sandaracinaceae;g__Sandaracinus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.126,
        "cell_length": 0.61,
        "doubling_h": 0.801,
        "growth_tmp": 28.761,
        "optimum_tmp": 29.364,
        "optimum_ph": 7.8,
        "genome_size": 9965390.721,
        "gc_content": 69.329,
        "coding_genes": 8198.189,
        "rRNA16S_genes": 3.222,
        "tRNA_genes": 63.782,
        "gram_stain": 0.0,
        "sporulation": 0.928,
        "motility": 0.941,
        "range_salinity": 0.75,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Myxococcota",
        "c__Polyangia",
        "o__Polyangiales",
        "f__SG8-38",
        "g__SG8-38",
        "s__SG8-38 sp003647035"
    ],
    "_genome_taxon": [
        "Myxococcales",
        "bacterium",
        "d__Bacteria",
        "p__Myxococcota",
        "c__Polyangia",
        "o__Polyangiales",
        "f__SG8-38",
        "g__SG8-38",
        "s__SG8-38 sp003647035",
        "Bacteria",
        "Myxococcota",
        "Polyangia",
        "Polyangiales",
        "SG8-38",
        "SG8-38",
        "SG8-38",
        "sp003647035"
    ],
    "_meo": [
        {
            "id": "MEO_0000040",
            "label": "marine sediment"
        },
        {
            "id": "MEO_0001170",
            "label": "cold seep"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}