<?xml version="1.0" ?>
<BioSampleSet><BioSample access="public" publication_date="2020-05-01T00:50:28.427" last_update="2020-05-01T00:50:28.427" submission_date="2019-11-14T20:15:08.297" id="13287930" accession="SAMN13287930">   <Ids>     <Id db="BioSample" is_primary="1">SAMN13287930</Id>     <Id db_label="Sample name">GLR123</Id>   </Ids>   <Description>     <Title>Metagenome-assembled genome GLR123</Title>     <Organism taxonomy_id="2268189" taxonomy_name="Candidatus Scalindua sp.">       <OrganismName>Candidatus Scalindua sp.</OrganismName>     </Organism>     <Comment>       <Paragraph>Keywords: GSC:MIxS;MIMAG:6.0</Paragraph>     </Comment>   </Description>   <Owner>     <Name url="http://www.gns.cri.nz">GNS Science</Name>     <Contacts>       <Contact email="l.stewart@gns.cri.nz">         <Name>           <First>Lucy</First>           <Last>Stewart</Last>           <Middle>C</Middle>         </Name>       </Contact>     </Contacts>   </Owner>   <Models>     <Model>MIMAG.water</Model>   </Models>   <Package display_name="MIMAG: metagenome-assembled genome, water; version 6.0">MIMAG.water.6.0</Package>   <Attributes>     <Attribute attribute_name="collection_date" harmonized_name="collection_date" display_name="collection date">2018/2019</Attribute>     <Attribute attribute_name="depth" harmonized_name="depth" display_name="depth">0-25cm</Attribute>     <Attribute attribute_name="elev" harmonized_name="elev" display_name="elevation">-1974m</Attribute>     <Attribute attribute_name="env_broad_scale" harmonized_name="env_broad_scale" display_name="broad-scale environmental context">marine cold seep biome [ENVO:01000127] | marine bathyal zone biome [ENVO:01000026] | marine benthic biome [ENVO:01000024]</Attribute>     <Attribute attribute_name="env_local_scale" harmonized_name="env_local_scale" display_name="local-scale environmental context">cold seep [ENVO:01000263] | marine cold seep biome [ENVO:01000127] |</Attribute>     <Attribute attribute_name="env_medium" harmonized_name="env_medium" display_name="environmental medium">marine sediment [ENVO:03000033]</Attribute>     <Attribute attribute_name="geo_loc_name" harmonized_name="geo_loc_name" display_name="geographic location">New Zealand: Hikurangi Margin</Attribute>     <Attribute attribute_name="lat_lon" harmonized_name="lat_lon" display_name="latitude and longitude">41.77033333 S 176.0835 E</Attribute>     <Attribute attribute_name="note">Metagenome-assembled genome from metagenomes SRR10375097-9 and SRR10097245-7</Attribute>     <Attribute attribute_name="isolation_source" harmonized_name="isolation_source" display_name="isolation source">Glendhu Ridge methane seep</Attribute>     <Attribute attribute_name="completeness score">63.3802816901408</Attribute>     <Attribute attribute_name="contamination score">0</Attribute>     <Attribute attribute_name="analysis project type">metagenome-assembled genome</Attribute>     <Attribute attribute_name="taxa id">multi-marker approach (GTDBTk)</Attribute>     <Attribute attribute_name="assembly software">Megahit v.1.1.13</Attribute>     <Attribute attribute_name="assembly quality">Medium</Attribute>     <Attribute attribute_name="completeness software">Anvi'o v6.0</Attribute>     <Attribute attribute_name="number of contigs">341</Attribute>     <Attribute attribute_name="16S recovered">no</Attribute>     <Attribute attribute_name="16S recovery software">Anvi'o v6.0 (using Prokka v1.14.3)</Attribute>     <Attribute attribute_name="decontamination software">Anvi'o v6.0</Attribute>     <Attribute attribute_name="bin parameters">kmer+coverage</Attribute>     <Attribute attribute_name="binning software">Anvi'o v6.0 (using CONCOCT v1.1.0)</Attribute>     <Attribute attribute_name="reassembly post binning">no</Attribute>     <Attribute attribute_name="total assembly size">1255688</Attribute>     <Attribute attribute_name="contig L50">3540</Attribute>     <Attribute attribute_name="relative coverage Anaerobic (SRR10097246)">0.0650799783143582</Attribute>     <Attribute attribute_name="relative coverage Anoxic (SRR10375098)">0.195434589783043</Attribute>     <Attribute attribute_name="relative coverage Infiltration (SRR10097247)">0.0268985412555655</Attribute>     <Attribute attribute_name="relative coverage Low pH (SRR10097245)">0.309029595927364</Attribute>     <Attribute attribute_name="relative coverage Oxic (SRR10375099)">0.397513790162858</Attribute>     <Attribute attribute_name="relative coverage Reference (SRR10375097)">0.0060435045568106</Attribute>     <Attribute attribute_name="metagenomic">1</Attribute>     <Attribute attribute_name="environmental-sample">1</Attribute>     <Attribute attribute_name="sample-type" harmonized_name="sample_type" display_name="sample type">metagenomic assembly</Attribute>     <Attribute attribute_name="metagenome-source">marine sediment metagenome</Attribute>     <Attribute attribute_name="isolate" harmonized_name="isolate" display_name="isolate">GLR123</Attribute>     <Attribute attribute_name="derived-from" harmonized_name="derived_from" display_name="derived from">This BioSample is a metagenomic assembly obtained from the marine sediment metagenome BioSamples: SAMN12673430,SAMN12673432,SAMN12673436,SAMN12673456, SAMN12673457, and SAMN12673458</Attribute>   </Attributes>   <Links>     <Link type="entrez" target="bioproject" label="PRJNA562730">562730</Link>   </Links>   <Status status="live" when="2020-05-01T00:50:28.427"/> </BioSample> </BioSampleSet>
