{
    "type": "genome",
    "identifier": "GCA_013140415.1",
    "organism": "Nitrosarchaeum sp.",
    "title": "Nitrosarchaeum sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Radboud University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_013140415.1",
        "bioproject": "PRJNA622654",
        "biosample": "SAMN14539145",
        "wgs_master": "JABFSW000000000.1",
        "refseq_category": "na",
        "taxid": "2026886",
        "species_taxid": "2026886",
        "organism_name": "Nitrosarchaeum sp.",
        "infraspecific_name": "",
        "isolate": "WB-IL-22",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/05/21",
        "asm_name": "ASM1314041v1",
        "submitter": "Radboud University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/140/415/GCA_013140415.1_ASM1314041v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-05-21",
    "dateModified": "2020-05-21",
    "datePublished": "2020-05-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nitrosarchaeum sp."
        ],
        "sample_taxid": [
            "2026886"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Netherlands"
        ],
        "sample_host_location_id": [],
        "data_size": "0.339 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 90.62,
        "contamination": 4.92,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1213441",
        "Number of Sequences": "213",
        "Longest Sequences (bp)": "23776",
        "N50 (bp)": "6275",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "33.2",
        "Number of CDSs": "1263",
        "Average Protein Length": "248.3",
        "Coding Ratio (%)": "77.5",
        "Number of rRNAs": "1",
        "Number of tRNAs": "30",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Nitrosopumilus adriaticus",
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                "accession": "GCA_000956175.1",
                "taxid": 1580092,
                "species_taxid": 1580092,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 179,
                "total_fragments": 298,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosopumilus maritimus",
                "strain": "strain=SCM1",
                "accession": "GCA_000018465.1",
                "taxid": 338192,
                "species_taxid": 338192,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3606,
                "matched_fragments": 169,
                "total_fragments": 298,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosopumilus cobalaminigenes",
                "strain": "strain=HCA1",
                "accession": "GCA_013407145.1",
                "taxid": 1470066,
                "species_taxid": 1470066,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2989,
                "matched_fragments": 198,
                "total_fragments": 298,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosopumilus oxyclinae",
                "strain": "strain=HCE1",
                "accession": "GCA_013407165.1",
                "taxid": 1959104,
                "species_taxid": 1959104,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2316,
                "matched_fragments": 185,
                "total_fragments": 298,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosopumilus piranensis",
                "strain": "strain=D3C",
                "accession": "GCA_000875775.1",
                "taxid": 1582439,
                "species_taxid": 1582439,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8689,
                "matched_fragments": 167,
                "total_fragments": 298,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 90.62,
            "contamination": 4.92,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_013140415.1",
                "gtdb_species": "s__Nitrosarchaeum sp013140415",
                "ani": 100.0,
                "matched_fragments": 297,
                "total_fragments": 298,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrosopumilaceae;g__Nitrosarchaeum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_009697485.1",
                "gtdb_species": "s__Nitrosarchaeum sp009697485",
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                "matched_fragments": 145,
                "total_fragments": 298,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrosopumilaceae;g__Nitrosarchaeum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004297665.1",
                "gtdb_species": "s__Nitrosarchaeum sp004297665",
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                "matched_fragments": 181,
                "total_fragments": 298,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrosopumilaceae;g__Nitrosarchaeum",
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                "mean_intra_species_ani": "96.40",
                "min_intra_species_ani": "95.66",
                "mean_intra_species_af": "0.66",
                "min_intra_species_af": "0.65",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_003569705.1",
                "gtdb_species": "s__Nitrosarchaeum sp003569705",
                "ani": 89.7571,
                "matched_fragments": 264,
                "total_fragments": 298,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrosopumilaceae;g__Nitrosarchaeum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.59",
                "min_intra_species_ani": "99.59",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_005798405.1",
                "gtdb_species": "s__Nitrosarchaeum sp005798405",
                "ani": 87.8381,
                "matched_fragments": 234,
                "total_fragments": 298,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrosopumilaceae;g__Nitrosarchaeum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.84",
                "min_intra_species_ani": "99.81",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Archaea",
        "p__Thermoproteota",
        "c__Nitrososphaeria",
        "o__Nitrososphaerales",
        "f__Nitrosopumilaceae",
        "g__Nitrosarchaeum",
        "s__Nitrosarchaeum sp013140415"
    ],
    "_genome_taxon": [
        "Nitrosarchaeum",
        "sp.",
        "d__Archaea",
        "p__Thermoproteota",
        "c__Nitrososphaeria",
        "o__Nitrososphaerales",
        "f__Nitrosopumilaceae",
        "g__Nitrosarchaeum",
        "s__Nitrosarchaeum sp013140415",
        "Archaea",
        "Thermoproteota",
        "Nitrososphaeria",
        "Nitrososphaerales",
        "Nitrosopumilaceae",
        "Nitrosarchaeum",
        "Nitrosarchaeum",
        "sp013140415"
    ],
    "_meo": [
        {
            "id": "MEO_0000837",
            "label": "human activity associated"
        },
        {
            "id": "MEO_0000116",
            "label": "biofilm"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}