{
    "type": "genome",
    "identifier": "GCA_013140455.1",
    "organism": "Nitrospira sp.",
    "title": "Nitrospira sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Radboud University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_013140455.1",
        "bioproject": "PRJNA622654",
        "biosample": "SAMN14539143",
        "wgs_master": "JABFSU000000000.1",
        "refseq_category": "na",
        "taxid": "70125",
        "species_taxid": "70125",
        "organism_name": "Nitrospira sp.",
        "infraspecific_name": "",
        "isolate": "WB-IL-20",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/05/21",
        "asm_name": "ASM1314045v1",
        "submitter": "Radboud University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/140/455/GCA_013140455.1_ASM1314045v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-05-21",
    "dateModified": "2020-05-21",
    "datePublished": "2020-05-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nitrospira sp."
        ],
        "sample_taxid": [
            "70125"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Netherlands"
        ],
        "sample_host_location_id": [],
        "data_size": "1.085 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 88.64,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3789341",
        "Number of Sequences": "143",
        "Longest Sequences (bp)": "140929",
        "N50 (bp)": "41484",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "57.6",
        "Number of CDSs": "3604",
        "Average Protein Length": "297.6",
        "Coding Ratio (%)": "84.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Nitrospira moscoviensis",
                "strain": "strain=NSP M-1",
                "accession": "GCA_001273775.1",
                "taxid": 42253,
                "species_taxid": 42253,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4853,
                "matched_fragments": 266,
                "total_fragments": 1192,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 88.64,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_013140455.1",
                "gtdb_species": "s__Nitrospira_D sp013140455",
                "ani": 100.0,
                "matched_fragments": 1185,
                "total_fragments": 1192,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002869855.2",
                "gtdb_species": "s__Nitrospira_D sp002869855",
                "ani": 90.6905,
                "matched_fragments": 884,
                "total_fragments": 1192,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.91",
                "min_intra_species_ani": "97.91",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002083555.1",
                "gtdb_species": "s__Nitrospira_D sp002083555",
                "ani": 88.5712,
                "matched_fragments": 912,
                "total_fragments": 1192,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900403705.1",
                "gtdb_species": "s__Nitrospira_D lenta",
                "ani": 87.1632,
                "matched_fragments": 841,
                "total_fragments": 1192,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900299245.1",
                "gtdb_species": "s__Nitrospira_D sp900299245",
                "ani": 82.9036,
                "matched_fragments": 547,
                "total_fragments": 1192,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002435325.1",
                "gtdb_species": "s__Nitrospira_D sp002435325",
                "ani": 78.5239,
                "matched_fragments": 345,
                "total_fragments": 1192,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.94",
                "min_intra_species_ani": "99.94",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900299325.1",
                "gtdb_species": "s__OMJK01 sp900299325",
                "ani": 77.4961,
                "matched_fragments": 179,
                "total_fragments": 1192,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__OMJK01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013140715.1",
                "gtdb_species": "s__Palsa-1315 sp013140715",
                "ani": 76.859,
                "matched_fragments": 146,
                "total_fragments": 1192,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Palsa-1315",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.388,
        "cell_length": null,
        "doubling_h": 1.079,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 4195141.429,
        "gc_content": 59.803,
        "coding_genes": 3920.25,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 46.5,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 1.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Nitrospirota",
        "c__Nitrospiria",
        "o__Nitrospirales",
        "f__Nitrospiraceae",
        "g__Nitrospira_D",
        "s__Nitrospira_D sp013140455"
    ],
    "_genome_taxon": [
        "Nitrospira",
        "sp.",
        "d__Bacteria",
        "p__Nitrospirota",
        "c__Nitrospiria",
        "o__Nitrospirales",
        "f__Nitrospiraceae",
        "g__Nitrospira_D",
        "s__Nitrospira_D sp013140455",
        "Bacteria",
        "Nitrospirota",
        "Nitrospiria",
        "Nitrospirales",
        "Nitrospiraceae",
        "Nitrospira",
        "D",
        "Nitrospira",
        "D",
        "sp013140455"
    ],
    "_meo": [
        {
            "id": "MEO_0000837",
            "label": "human activity associated"
        },
        {
            "id": "MEO_0000116",
            "label": "biofilm"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}