{
    "type": "genome",
    "identifier": "GCA_013141435.1",
    "organism": "Ferruginibacter sp.",
    "title": "Ferruginibacter sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Radboud University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_013141435.1",
        "bioproject": "PRJNA622654",
        "biosample": "SAMN14539096",
        "wgs_master": "JABFQZ000000000.1",
        "refseq_category": "na",
        "taxid": "1940288",
        "species_taxid": "1940288",
        "organism_name": "Ferruginibacter sp.",
        "infraspecific_name": "",
        "isolate": "P-RSF-IL-07",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/05/21",
        "asm_name": "ASM1314143v1",
        "submitter": "Radboud University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/141/435/GCA_013141435.1_ASM1314143v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-05-21",
    "dateModified": "2020-05-21",
    "datePublished": "2020-05-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Ferruginibacter sp."
        ],
        "sample_taxid": [
            "1940288"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Netherlands"
        ],
        "sample_host_location_id": [],
        "data_size": "0.840 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3056910",
        "Number of Sequences": "43",
        "Longest Sequences (bp)": "252453",
        "N50 (bp)": "104094",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "32.0",
        "Number of CDSs": "2574",
        "Average Protein Length": "347.7",
        "Coding Ratio (%)": "87.8",
        "Number of rRNAs": "0",
        "Number of tRNAs": "24",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Ginsengibacter hankyongi",
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                "accession": "GCA_008710285.1",
                "taxid": 2607284,
                "species_taxid": 2607284,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3354,
                "matched_fragments": 57,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limnovirga soli",
                "strain": "strain=KCS-6",
                "accession": "GCA_013106755.1",
                "taxid": 2656915,
                "species_taxid": 2656915,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.1281,
                "matched_fragments": 63,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_013141435.1",
                "gtdb_species": "s__Ferruginibacter sp013141435",
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                "matched_fragments": 982,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
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            {
                "accession": "GCA_903837525.1",
                "gtdb_species": "s__Ferruginibacter sp903837525",
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                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016721385.1",
                "gtdb_species": "s__Ferruginibacter sp016721385",
                "ani": 76.692,
                "matched_fragments": 181,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017988335.1",
                "gtdb_species": "s__Ferruginibacter sp017988335",
                "ani": 76.5439,
                "matched_fragments": 208,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903831575.1",
                "gtdb_species": "s__Ferruginibacter sp903831575",
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                "matched_fragments": 75,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018268135.1",
                "gtdb_species": "s__Ferruginibacter sp018268135",
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                "matched_fragments": 154,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.79",
                "min_intra_species_ani": "99.79",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016786725.1",
                "gtdb_species": "s__Ferruginibacter sp016786725",
                "ani": 76.0954,
                "matched_fragments": 73,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017983695.1",
                "gtdb_species": "s__Ferruginibacter sp017983695",
                "ani": 75.9911,
                "matched_fragments": 120,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018268155.1",
                "gtdb_species": "s__Ferruginibacter sp018268155",
                "ani": 75.8845,
                "matched_fragments": 109,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016713965.1",
                "gtdb_species": "s__Ferruginibacter sp016713965",
                "ani": 75.834,
                "matched_fragments": 87,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903858475.1",
                "gtdb_species": "s__Ferruginibacter sp903858475",
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                "matched_fragments": 70,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter",
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                "mean_intra_species_ani": "99.60",
                "min_intra_species_ani": "99.32",
                "mean_intra_species_af": "0.91",
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            },
            {
                "accession": "GCA_014379905.1",
                "gtdb_species": "s__Ferruginibacter sp014379905",
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                "matched_fragments": 90,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            {
                "accession": "GCA_016710595.1",
                "gtdb_species": "s__Ferruginibacter sp016710595",
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                "matched_fragments": 89,
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_903831935.1",
                "gtdb_species": "s__Sediminibacterium sp903831935",
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                "matched_fragments": 56,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.28",
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            },
            {
                "accession": "GCA_014377975.1",
                "gtdb_species": "s__Ferruginibacter sp014377975",
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                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": 0.238,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
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    "_gtdb_taxon": [
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        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Chitinophagales",
        "f__Chitinophagaceae",
        "g__Ferruginibacter",
        "s__Ferruginibacter sp013141435"
    ],
    "_genome_taxon": [
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        "sp.",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Chitinophagales",
        "f__Chitinophagaceae",
        "g__Ferruginibacter",
        "s__Ferruginibacter sp013141435",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Chitinophagales",
        "Chitinophagaceae",
        "Ferruginibacter",
        "Ferruginibacter",
        "sp013141435"
    ],
    "_meo": [
        {
            "id": "MEO_0000837",
            "label": "human activity associated"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}