{
    "type": "genome",
    "identifier": "GCA_013151875.1",
    "organism": "Deltaproteobacteria bacterium",
    "title": "Deltaproteobacteria bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Lab of Microbial Oceanography",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_013151875.1",
        "bioproject": "PRJNA557557",
        "biosample": "SAMN12405808",
        "wgs_master": "JAADHL000000000.1",
        "refseq_category": "na",
        "taxid": "2026735",
        "species_taxid": "2026735",
        "organism_name": "Deltaproteobacteria bacterium",
        "infraspecific_name": "",
        "isolate": "M_MetaBat.191",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/05/22",
        "asm_name": "ASM1315187v1",
        "submitter": "Lab of Microbial Oceanography",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/151/875/GCA_013151875.1_ASM1315187v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-05-22",
    "dateModified": "2020-05-22",
    "datePublished": "2020-05-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Deltaproteobacteria bacterium"
        ],
        "sample_taxid": [
            "2026735"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Pacific Ocean: East Pacific Rise"
        ],
        "sample_host_location_id": [],
        "data_size": "0.874 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3081147",
        "Number of Sequences": "398",
        "Longest Sequences (bp)": "37554",
        "N50 (bp)": "8790",
        "Gap Ratio (%)": "0.086104",
        "GCcontent (%)": "61.3",
        "Number of CDSs": "2171",
        "Average Protein Length": "356.1",
        "Coding Ratio (%)": "75.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "28",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_013151875.1",
                "gtdb_species": "s__JADDHL01 sp013151875",
                "ani": 100.0,
                "matched_fragments": 834,
                "total_fragments": 845,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__UBA9042;o__DTJE01;f__DTJE01;g__JADDHL01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_016784945.1",
                "gtdb_species": "s__JADDHL01 sp016784945",
                "ani": 77.6648,
                "matched_fragments": 196,
                "total_fragments": 845,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__UBA9042;o__DTJE01;f__DTJE01;g__JADDHL01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016875475.1",
                "gtdb_species": "s__VGRB01 sp016875475",
                "ani": 76.1864,
                "matched_fragments": 70,
                "total_fragments": 845,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__UBA9042;o__DTJE01;f__DTJE01;g__VGRB01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903847405.1",
                "gtdb_species": "s__CAIZWN01 sp903847405",
                "ani": 75.9374,
                "matched_fragments": 88,
                "total_fragments": 845,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__UBA9042;o__DTJE01;f__DTJE01;g__CAIZWN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.72",
                "min_intra_species_ani": "99.71",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_017994695.1",
                "gtdb_species": "s__JAGOKF01 sp017994695",
                "ani": 75.7549,
                "matched_fragments": 59,
                "total_fragments": 845,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__UBA9042;o__DTJE01;f__DTJE01;g__JAGOKF01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903857665.1",
                "gtdb_species": "s__CAIZWN01 sp903857665",
                "ani": 75.5104,
                "matched_fragments": 75,
                "total_fragments": 845,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__UBA9042;o__DTJE01;f__DTJE01;g__CAIZWN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.68",
                "min_intra_species_ani": "99.68",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Myxococcota",
        "c__UBA9042",
        "o__DTJE01",
        "f__DTJE01",
        "g__JADDHL01",
        "s__JADDHL01 sp013151875"
    ],
    "_genome_taxon": [
        "Deltaproteobacteria",
        "bacterium",
        "d__Bacteria",
        "p__Myxococcota",
        "c__UBA9042",
        "o__DTJE01",
        "f__DTJE01",
        "g__JADDHL01",
        "s__JADDHL01 sp013151875",
        "Bacteria",
        "Myxococcota",
        "UBA9042",
        "DTJE01",
        "DTJE01",
        "JADDHL01",
        "JADDHL01",
        "sp013151875"
    ],
    "_meo": [
        {
            "id": "MEO_0000031",
            "label": "hydrothermal vent"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}