{
    "type": "genome",
    "identifier": "GCA_013152105.1",
    "organism": "Oligoflexia bacterium",
    "title": "Oligoflexia bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Lab of Microbial Oceanography",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_013152105.1",
        "bioproject": "PRJNA557557",
        "biosample": "SAMN12405816",
        "wgs_master": "JAADHA000000000.1",
        "refseq_category": "na",
        "taxid": "2599941",
        "species_taxid": "2599941",
        "organism_name": "Oligoflexia bacterium",
        "infraspecific_name": "",
        "isolate": "M_MetaBat.154",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/05/22",
        "asm_name": "ASM1315210v1",
        "submitter": "Lab of Microbial Oceanography",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/152/105/GCA_013152105.1_ASM1315210v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-05-22",
    "dateModified": "2020-05-22",
    "datePublished": "2020-05-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Oligoflexia bacterium"
        ],
        "sample_taxid": [
            "2599941"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Pacific Ocean: East Pacific Rise"
        ],
        "sample_host_location_id": [],
        "data_size": "1.330 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 62.12,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4809616",
        "Number of Sequences": "693",
        "Longest Sequences (bp)": "24279",
        "N50 (bp)": "8007",
        "Gap Ratio (%)": "0.104270",
        "GCcontent (%)": "67.3",
        "Number of CDSs": "3602",
        "Average Protein Length": "333.2",
        "Coding Ratio (%)": "74.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "34",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Corallococcus exercitus",
                "strain": "strain=AB043A",
                "accession": "GCA_003611585.1",
                "taxid": 2316736,
                "species_taxid": 2316736,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.041,
                "matched_fragments": 87,
                "total_fragments": 1301,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fulvimonas soli",
                "strain": "strain=DSM 14263",
                "accession": "GCA_003148905.1",
                "taxid": 155197,
                "species_taxid": 155197,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9957,
                "matched_fragments": 60,
                "total_fragments": 1301,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fulvimonas soli",
                "strain": "strain=LMG 19981",
                "accession": "GCA_006352285.1",
                "taxid": 155197,
                "species_taxid": 155197,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9939,
                "matched_fragments": 60,
                "total_fragments": 1301,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ideonella dechloratans",
                "strain": "strain=CCUG 30977",
                "accession": "GCA_008801845.1",
                "taxid": 36863,
                "species_taxid": 36863,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9672,
                "matched_fragments": 58,
                "total_fragments": 1301,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ideonella dechloratans",
                "strain": "strain=CCUG 30977",
                "accession": "GCA_021049305.1",
                "taxid": 36863,
                "species_taxid": 36863,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9473,
                "matched_fragments": 61,
                "total_fragments": 1301,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Archangium gephyra",
                "strain": "strain=DSM 2261",
                "accession": "GCA_001027285.1",
                "taxid": 48,
                "species_taxid": 48,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9079,
                "matched_fragments": 95,
                "total_fragments": 1301,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Archangium gephyra",
                "strain": "strain=DSM 2261",
                "accession": "GCA_003387095.1",
                "taxid": 48,
                "species_taxid": 48,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8988,
                "matched_fragments": 97,
                "total_fragments": 1301,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corallococcus aberystwythensis",
                "strain": "strain=AB050A",
                "accession": "GCA_003612165.1",
                "taxid": 2316722,
                "species_taxid": 2316722,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8972,
                "matched_fragments": 83,
                "total_fragments": 1301,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermobifida alba",
                "strain": "strain=DSM 43795",
                "accession": "GCA_023208015.1",
                "taxid": 53522,
                "species_taxid": 53522,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8063,
                "matched_fragments": 56,
                "total_fragments": 1301,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polyangium fumosum",
                "strain": "strain=DSM 14668",
                "accession": "GCA_005144585.1",
                "taxid": 889272,
                "species_taxid": 889272,
                "relation_to_type": "neotype",
                "validated": true,
                "ani": 74.8004,
                "matched_fragments": 79,
                "total_fragments": 1301,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinophytocola algeriensis",
                "strain": "strain=CECT 8960",
                "accession": "GCA_014203735.1",
                "taxid": 1768010,
                "species_taxid": 1768010,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7767,
                "matched_fragments": 95,
                "total_fragments": 1301,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinophytocola algeriensis",
                "strain": "strain=DSM 46746",
                "accession": "GCA_014874055.1",
                "taxid": 1768010,
                "species_taxid": 1768010,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7767,
                "matched_fragments": 95,
                "total_fragments": 1301,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermobifida cellulosilytica",
                "strain": "strain=TB100",
                "accession": "GCA_001517975.1",
                "taxid": 144786,
                "species_taxid": 144786,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7744,
                "matched_fragments": 62,
                "total_fragments": 1301,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microlunatus parietis",
                "strain": "strain=DSM 22083",
                "accession": "GCA_013407955.1",
                "taxid": 682979,
                "species_taxid": 682979,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7668,
                "matched_fragments": 79,
                "total_fragments": 1301,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Archangium violaceum",
                "strain": "strain=Cb vi76",
                "accession": "GCA_000733295.1",
                "taxid": 83451,
                "species_taxid": 83451,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7388,
                "matched_fragments": 92,
                "total_fragments": 1301,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Glycomyces artemisiae",
                "strain": "strain=CGMCC 4.7067",
                "accession": "GCA_003002955.1",
                "taxid": 1076443,
                "species_taxid": 1076443,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7366,
                "matched_fragments": 62,
                "total_fragments": 1301,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ideonella livida",
                "strain": "strain=TBM-1",
                "accession": "GCA_010499455.1",
                "taxid": 2707176,
                "species_taxid": 2707176,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7363,
                "matched_fragments": 63,
                "total_fragments": 1301,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salinarimonas rosea",
                "strain": "strain=DSM 21201",
                "accession": "GCA_000429045.1",
                "taxid": 552063,
                "species_taxid": 552063,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.719,
                "matched_fragments": 57,
                "total_fragments": 1301,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nonomuraea typhae",
                "strain": "strain=p1410",
                "accession": "GCA_009760925.1",
                "taxid": 2603600,
                "species_taxid": 2603600,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7086,
                "matched_fragments": 109,
                "total_fragments": 1301,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter alkalitolerans",
                "strain": "strain=KACC 19305",
                "accession": "GCA_016722765.1",
                "taxid": 2039631,
                "species_taxid": 2039631,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7084,
                "matched_fragments": 50,
                "total_fragments": 1301,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 62.12,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_013152105.1",
                "gtdb_species": "s__UBA2385 sp013152105",
                "ani": 100.0,
                "matched_fragments": 1283,
                "total_fragments": 1301,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__UBA2385;g__UBA2385",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002343455.1",
                "gtdb_species": "s__UBA2385 sp002343455",
                "ani": 77.6225,
                "matched_fragments": 447,
                "total_fragments": 1301,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__UBA2385;g__UBA2385",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003694325.1",
                "gtdb_species": "s__J125 sp003694325",
                "ani": 77.4181,
                "matched_fragments": 330,
                "total_fragments": 1301,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__UBA2385;g__J125",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015489145.1",
                "gtdb_species": "s__S143-5 sp015489145",
                "ani": 76.3129,
                "matched_fragments": 193,
                "total_fragments": 1301,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__UBA2385;g__S143-5",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018401435.1",
                "gtdb_species": "s__M30B51 sp018401435",
                "ani": 76.1974,
                "matched_fragments": 229,
                "total_fragments": 1301,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__UBA2385;g__M30B51",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016845285.1",
                "gtdb_species": "s__BH17 sp016845285",
                "ani": 75.9861,
                "matched_fragments": 124,
                "total_fragments": 1301,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__UBA2385;g__BH17",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016792625.1",
                "gtdb_species": "s__JAEUKK01 sp016792625",
                "ani": 75.8569,
                "matched_fragments": 203,
                "total_fragments": 1301,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__UBA2385;g__JAEUKK01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016927815.1",
                "gtdb_species": "s__JAFGLY01 sp016927815",
                "ani": 75.5696,
                "matched_fragments": 69,
                "total_fragments": 1301,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__JAFGLY01;g__JAFGLY01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_006226595.1",
                "gtdb_species": "s__M1803 sp006226595",
                "ani": 75.445,
                "matched_fragments": 135,
                "total_fragments": 1301,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__GCA-2862545;g__M1803",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903875225.1",
                "gtdb_species": "s__CAIUMM01 sp903875225",
                "ani": 75.4307,
                "matched_fragments": 100,
                "total_fragments": 1301,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__SXON01;g__CAIUMM01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.62",
                "min_intra_species_ani": "99.43",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_016794345.1",
                "gtdb_species": "s__CAITIQ01 sp016794345",
                "ani": 74.9649,
                "matched_fragments": 71,
                "total_fragments": 1301,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__Polyangiaceae;g__CAITIQ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_015070875.1",
                "gtdb_species": "s__Ramlibacter sp015070875",
                "ani": 74.8551,
                "matched_fragments": 53,
                "total_fragments": 1301,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ramlibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017744955.1",
                "gtdb_species": "s__Dokdonella_A sp017744955",
                "ani": 74.8086,
                "matched_fragments": 52,
                "total_fragments": 1301,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Dokdonella_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016218805.1",
                "gtdb_species": "s__JACRCW01 sp016218805",
                "ani": 74.7577,
                "matched_fragments": 51,
                "total_fragments": 1301,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__JACRCW01;o__JACRCW01;f__JACRCW01;g__JACRCW01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Myxococcota",
        "c__UBA796",
        "o__UBA796",
        "f__UBA2385",
        "g__UBA2385",
        "s__UBA2385 sp013152105"
    ],
    "_genome_taxon": [
        "Oligoflexia",
        "bacterium",
        "d__Bacteria",
        "p__Myxococcota",
        "c__UBA796",
        "o__UBA796",
        "f__UBA2385",
        "g__UBA2385",
        "s__UBA2385 sp013152105",
        "Bacteria",
        "Myxococcota",
        "UBA796",
        "UBA796",
        "UBA2385",
        "UBA2385",
        "UBA2385",
        "sp013152105"
    ],
    "_meo": [
        {
            "id": "MEO_0000031",
            "label": "hydrothermal vent"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}