{
    "type": "genome",
    "identifier": "GCA_013152435.1",
    "organism": "Chloroflexota bacterium",
    "title": "Chloroflexota bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Lab of Microbial Oceanography",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_013152435.1",
        "bioproject": "PRJNA557557",
        "biosample": "SAMN12405793",
        "wgs_master": "JAADGJ000000000.1",
        "refseq_category": "na",
        "taxid": "2026724",
        "species_taxid": "2026724",
        "organism_name": "Chloroflexota bacterium",
        "infraspecific_name": "",
        "isolate": "M_MetaBat.114",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/05/22",
        "asm_name": "ASM1315243v1",
        "submitter": "Lab of Microbial Oceanography",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/152/435/GCA_013152435.1_ASM1315243v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-05-22",
    "dateModified": "2020-05-22",
    "datePublished": "2020-05-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Chloroflexota bacterium"
        ],
        "sample_taxid": [
            "2026724"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Pacific Ocean: East Pacific Rise"
        ],
        "sample_host_location_id": [],
        "data_size": "1.395 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4973004",
        "Number of Sequences": "149",
        "Longest Sequences (bp)": "188917",
        "N50 (bp)": "47240",
        "Gap Ratio (%)": "0.033360",
        "GCcontent (%)": "64.3",
        "Number of CDSs": "3915",
        "Average Protein Length": "360.1",
        "Coding Ratio (%)": "85.0",
        "Number of rRNAs": "1",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Thermoflexus hugenholtzii",
                "strain": "strain=JAD2",
                "accession": "GCA_900187885.1",
                "taxid": 1495650,
                "species_taxid": 1495650,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.2713,
                "matched_fragments": 62,
                "total_fragments": 1579,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter tataouinensis",
                "strain": "strain=TTB310",
                "accession": "GCA_000215705.1",
                "taxid": 94132,
                "species_taxid": 94132,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.6809,
                "matched_fragments": 62,
                "total_fragments": 1579,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 99.54,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_013152435.1",
                "gtdb_species": "s__DUEN01 sp013152435",
                "ani": 100.0,
                "matched_fragments": 1563,
                "total_fragments": 1579,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__DUEN01;f__DUEN01;g__DUEN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_011176545.1",
                "gtdb_species": "s__DUEN01 sp011176545",
                "ani": 81.0096,
                "matched_fragments": 742,
                "total_fragments": 1579,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__DUEN01;f__DUEN01;g__DUEN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001871755.1",
                "gtdb_species": "s__CG2-30-64-16 sp001871755",
                "ani": 76.09,
                "matched_fragments": 77,
                "total_fragments": 1579,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__CG2-30-64-16;f__CG2-30-64-16;g__CG2-30-64-16",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002842085.1",
                "gtdb_species": "s__CG2-30-64-16 sp002842085",
                "ani": 75.9517,
                "matched_fragments": 94,
                "total_fragments": 1579,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__CG2-30-64-16;f__CG2-30-64-16;g__CG2-30-64-16",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014879765.1",
                "gtdb_species": "s__JAAEKA01 sp014879765",
                "ani": 75.8705,
                "matched_fragments": 106,
                "total_fragments": 1579,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__JAAEKA01;f__JAAEKA01;g__JAAEKA01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014155705.1",
                "gtdb_species": "s__JAAEKA01 sp014155705",
                "ani": 75.8445,
                "matched_fragments": 51,
                "total_fragments": 1579,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__JAAEKA01;f__JAAEKA01;g__JAAEKA01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014874485.1",
                "gtdb_species": "s__DTLA01 sp014874485",
                "ani": 75.5873,
                "matched_fragments": 73,
                "total_fragments": 1579,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__DTLA01;f__DTLA01;g__DTLA01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016789165.1",
                "gtdb_species": "s__SpSt-583 sp016789165",
                "ani": 75.3732,
                "matched_fragments": 72,
                "total_fragments": 1579,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__UBA6663;g__SpSt-583",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900187885.1",
                "gtdb_species": "s__Thermoflexus hugenholtzii",
                "ani": 75.2593,
                "matched_fragments": 63,
                "total_fragments": 1579,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Thermoflexales;f__Thermoflexaceae;g__Thermoflexus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.76",
                "min_intra_species_ani": "95.14",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_011046405.1",
                "gtdb_species": "s__DSAR01 sp011046405",
                "ani": 75.1803,
                "matched_fragments": 54,
                "total_fragments": 1579,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__B4-G1;f__B4-G1;g__DSAR01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002329325.1",
                "gtdb_species": "s__UBA1429 sp002329325",
                "ani": 75.1381,
                "matched_fragments": 50,
                "total_fragments": 1579,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__UBA1429;f__UBA1429;g__UBA1429",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012729765.1",
                "gtdb_species": "s__JAAYCM01 sp012729765",
                "ani": 74.9309,
                "matched_fragments": 58,
                "total_fragments": 1579,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Aggregatilineales;f__Aggregatilineaceae;g__JAAYCM01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Chloroflexota",
        "c__Anaerolineae",
        "o__DUEN01",
        "f__DUEN01",
        "g__DUEN01",
        "s__DUEN01 sp013152435"
    ],
    "_genome_taxon": [
        "Chloroflexota",
        "bacterium",
        "d__Bacteria",
        "p__Chloroflexota",
        "c__Anaerolineae",
        "o__DUEN01",
        "f__DUEN01",
        "g__DUEN01",
        "s__DUEN01 sp013152435",
        "Bacteria",
        "Chloroflexota",
        "Anaerolineae",
        "DUEN01",
        "DUEN01",
        "DUEN01",
        "DUEN01",
        "sp013152435"
    ],
    "_meo": [
        {
            "id": "MEO_0000031",
            "label": "hydrothermal vent"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}