{
    "type": "genome",
    "identifier": "GCA_013153495.1",
    "organism": "Aquificae bacterium",
    "title": "Aquificae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Lab of Microbial Oceanography",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_013153495.1",
        "bioproject": "PRJNA557557",
        "biosample": "SAMN12405667",
        "wgs_master": "JAADEH000000000.1",
        "refseq_category": "na",
        "taxid": "2202151",
        "species_taxid": "2202151",
        "organism_name": "Aquificae bacterium",
        "infraspecific_name": "",
        "isolate": "L_MetaBat.199",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/05/22",
        "asm_name": "ASM1315349v1",
        "submitter": "Lab of Microbial Oceanography",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/153/495/GCA_013153495.1_ASM1315349v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-05-22",
    "dateModified": "2020-05-22",
    "datePublished": "2020-05-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Aquificota bacterium"
        ],
        "sample_taxid": [
            "2202151"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Pacific Ocean: East Pacific Rise"
        ],
        "sample_host_location_id": [],
        "data_size": "0.449 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 83.33,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1591393",
        "Number of Sequences": "12",
        "Longest Sequences (bp)": "730543",
        "N50 (bp)": "146852",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "47.5",
        "Number of CDSs": "1755",
        "Average Protein Length": "290.5",
        "Coding Ratio (%)": "96.1",
        "Number of rRNAs": "1",
        "Number of tRNAs": "36",
        "Number of CRISPRs": "6"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Aquifex aeolicus",
                "strain": "strain=VF5",
                "accession": "GCA_000008625.1",
                "taxid": 63363,
                "species_taxid": 63363,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1918,
                "matched_fragments": 52,
                "total_fragments": 524,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 83.33,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_013153495.1",
                "gtdb_species": "s__Hydrogenivirga sp013153495",
                "ani": 100.0,
                "matched_fragments": 523,
                "total_fragments": 524,
                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Aquificales;f__Aquificaceae;g__Hydrogenivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_015492115.1",
                "gtdb_species": "s__Hydrogenivirga sp015492115",
                "ani": 78.0524,
                "matched_fragments": 190,
                "total_fragments": 524,
                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Aquificales;f__Aquificaceae;g__Hydrogenivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.46",
                "min_intra_species_ani": "98.46",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_015487535.1",
                "gtdb_species": "s__Hydrogenivirga sp015487535",
                "ani": 77.1633,
                "matched_fragments": 127,
                "total_fragments": 524,
                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Aquificales;f__Aquificaceae;g__Hydrogenivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015490115.1",
                "gtdb_species": "s__Hydrogenivirga sp015490115",
                "ani": 76.9045,
                "matched_fragments": 109,
                "total_fragments": 524,
                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Aquificales;f__Aquificaceae;g__Hydrogenivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011375045.1",
                "gtdb_species": "s__Hydrogenivirga aeolica_A",
                "ani": 76.8665,
                "matched_fragments": 83,
                "total_fragments": 524,
                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Aquificales;f__Aquificaceae;g__Hydrogenivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.75",
                "min_intra_species_ani": "95.63",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_015490215.1",
                "gtdb_species": "s__Hydrogenivirga sp015490215",
                "ani": 76.7711,
                "matched_fragments": 105,
                "total_fragments": 524,
                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Aquificales;f__Aquificaceae;g__Hydrogenivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.49",
                "min_intra_species_ani": "98.49",
                "mean_intra_species_af": "0.73",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_015487835.1",
                "gtdb_species": "s__Hydrogenivirga sp015487835",
                "ani": 76.625,
                "matched_fragments": 78,
                "total_fragments": 524,
                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Aquificales;f__Aquificaceae;g__Hydrogenivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015490105.1",
                "gtdb_species": "s__Hydrogenivirga sp015490105",
                "ani": 76.4623,
                "matched_fragments": 63,
                "total_fragments": 524,
                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Aquificales;f__Aquificaceae;g__Hydrogenivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Aquificota",
        "c__Aquificae",
        "o__Aquificales",
        "f__Aquificaceae",
        "g__Hydrogenivirga",
        "s__Hydrogenivirga sp013153495"
    ],
    "_genome_taxon": [
        "Aquificae",
        "bacterium",
        "d__Bacteria",
        "p__Aquificota",
        "c__Aquificae",
        "o__Aquificales",
        "f__Aquificaceae",
        "g__Hydrogenivirga",
        "s__Hydrogenivirga sp013153495",
        "Bacteria",
        "Aquificota",
        "Aquificae",
        "Aquificales",
        "Aquificaceae",
        "Hydrogenivirga",
        "Hydrogenivirga",
        "sp013153495"
    ],
    "_meo": [
        {
            "id": "MEO_0000031",
            "label": "hydrothermal vent"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}