{ "type": "genome", "identifier": "GCA_013178155.1", "organism": "Armatimonadota bacterium", "title": "Armatimonadota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Research Center of Biotechnology RAS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013178155.1", "bioproject": "PRJNA414521", "biosample": "SAMN14896046", "wgs_master": "JABLXH000000000.1", "refseq_category": "na", "taxid": "2033014", "species_taxid": "2033014", "organism_name": "Armatimonadota bacterium", "infraspecific_name": "", "isolate": "Ch33", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/27", "asm_name": "ASM1317815v1", "submitter": "Research Center of Biotechnology RAS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/178/155/GCA_013178155.1_ASM1317815v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-27", "dateModified": "2020-05-27", "datePublished": "2020-05-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Armatimonadota bacterium" ], "sample_taxid": [ "2033014" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia: Chazhemto settlement, Tomsk oblast" ], "sample_host_location_id": [], "data_size": "1.550 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 3.47, "strain_heterogeneity": 66.67, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5530240", "Number of Sequences": "211", "Longest Sequences (bp)": "212249", "N50 (bp)": "44438", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.8", "Number of CDSs": "4081", "Average Protein Length": "395.0", "Coding Ratio (%)": "87.4", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces palmae", "strain": "strain=JCM 31289", "accession": "GCA_004684805.1", "taxid": 1701085, "species_taxid": 1701085, "relation_to_type": "type", "validated": true, "ani": 74.7865, "matched_fragments": 55, "total_fragments": 1736, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 3.47, "strain_heterogeneity": 66.67 }, "gtdb_result": [ { "accession": "GCA_013178155.1", "gtdb_species": "s__JABLXH01 sp013178155", "ani": 100.0, "matched_fragments": 1722, "total_fragments": 1736, "gtdb_taxonomy": "d__Bacteria;p__Armatimonadota;c__UBA5377;o__UBA5377;f__JABLXH01;g__JABLXH01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_018056145.1", "gtdb_species": "s__JABUFB01 sp018056145", "ani": 75.8956, "matched_fragments": 124, "total_fragments": 1736, "gtdb_taxonomy": "d__Bacteria;p__Armatimonadota;c__UBA5377;o__UBA5377;f__JABUFB01;g__JABUFB01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013314775.1", "gtdb_species": "s__JABUFB01 sp013314775", "ani": 75.8485, "matched_fragments": 112, "total_fragments": 1736, "gtdb_taxonomy": "d__Bacteria;p__Armatimonadota;c__UBA5377;o__UBA5377;f__JABUFB01;g__JABUFB01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016869045.1", "gtdb_species": "s__VGFC01 sp016869045", "ani": 75.7058, "matched_fragments": 138, "total_fragments": 1736, "gtdb_taxonomy": "d__Bacteria;p__Armatimonadota;c__UBA5377;o__UBA5377;f__VGFC01;g__VGFC01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Armatimonadota", "c__UBA5377", "o__UBA5377", "f__JABLXH01", "g__JABLXH01", "s__JABLXH01 sp013178155" ], "_genome_taxon": [ "Armatimonadota", "bacterium", "d__Bacteria", "p__Armatimonadota", "c__UBA5377", "o__UBA5377", "f__JABLXH01", "g__JABLXH01", "s__JABLXH01 sp013178155", "Bacteria", "Armatimonadota", "UBA5377", "UBA5377", "JABLXH01", "JABLXH01", "JABLXH01", "sp013178155" ], "_meo": [ { "id": "MEO_0001480", "label": "subsurface" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }