{ "type": "genome", "identifier": "GCA_013201385.1", "organism": "Methanoculleus sp.", "title": "Methanoculleus sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Swedish University of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013201385.1", "bioproject": "PRJNA625873", "biosample": "SAMN14847741", "wgs_master": "JABMJF000000000.1", "refseq_category": "na", "taxid": "90427", "species_taxid": "90427", "organism_name": "Methanoculleus sp.", "infraspecific_name": "", "isolate": "MAG28", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/31", "asm_name": "ASM1320138v1", "submitter": "Swedish University of Agricultural Sciences", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/201/385/GCA_013201385.1_ASM1320138v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-31", "dateModified": "2020-05-31", "datePublished": "2020-05-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Methanoculleus sp." ], "sample_taxid": [ "90427" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden: Uppsala" ], "sample_host_location_id": [], "data_size": "0.585 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 73.61, "contamination": 12.5, "strain_heterogeneity": 60.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2042318", "Number of Sequences": "218", "Longest Sequences (bp)": "75542", "N50 (bp)": "13769", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.0", "Number of CDSs": "1912", "Average Protein Length": "274.2", "Coding Ratio (%)": "77.0", "Number of rRNAs": "1", "Number of tRNAs": "34", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methanoculleus bourgensis", "strain": "strain=MS2T", "accession": "GCA_000304355.2", "taxid": 83986, "species_taxid": 83986, "relation_to_type": "type", "validated": true, "ani": 85.4492, "matched_fragments": 438, "total_fragments": 561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanoculleus marisnigri", "strain": "strain=JR1", "accession": "GCA_000015825.1", "taxid": 2198, "species_taxid": 2198, "relation_to_type": "type", "validated": true, "ani": 80.7907, "matched_fragments": 326, "total_fragments": 561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanoculleus sediminis", "strain": "strain=S3Fa", "accession": "GCA_001017125.1", "taxid": 1550566, "species_taxid": 1550566, "relation_to_type": "type", "validated": true, "ani": 80.5367, "matched_fragments": 323, "total_fragments": 561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanoculleus chikugoensis", "strain": "strain=MG62", "accession": "GCA_019669965.1", "taxid": 118126, "species_taxid": 118126, "relation_to_type": "type", "validated": true, "ani": 80.4186, "matched_fragments": 345, "total_fragments": 561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanoculleus horonobensis", "strain": "strain=T10", "accession": "GCA_001602375.1", "taxid": 528314, "species_taxid": 528314, "relation_to_type": "type", "validated": true, "ani": 80.3951, "matched_fragments": 333, "total_fragments": 561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanoculleus chikugoensis", "strain": "strain=JCM 10825", "accession": "GCA_001315965.1", "taxid": 118126, "species_taxid": 118126, "relation_to_type": "type", 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