{ "type": "genome", "identifier": "GCA_013203955.1", "organism": "Rhodospirillales bacterium", "title": "Rhodospirillales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Universite Laval", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013203955.1", "bioproject": "PRJNA616293", "biosample": "SAMN14944552", "wgs_master": "JABMOY000000000.1", "refseq_category": "na", "taxid": "2026786", "species_taxid": "2026786", "organism_name": "Rhodospirillales bacterium", "infraspecific_name": "", "isolate": "bin.246", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/01", "asm_name": "ASM1320395v1", "submitter": "Universite Laval", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/203/955/GCA_013203955.1_ASM1320395v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-01", "dateModified": "2020-06-01", "datePublished": "2020-06-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodospirillales bacterium" ], "sample_taxid": [ "2026786" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada:Ellesmere Island, Lake A" ], "sample_host_location_id": [], "data_size": "0.889 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.37, "contamination": 2.08, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3135012", "Number of Sequences": "245", "Longest Sequences (bp)": "106002", "N50 (bp)": "20472", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.7", "Number of CDSs": "2916", "Average Protein Length": "298.9", "Coding Ratio (%)": "83.4", "Number of rRNAs": "0", "Number of tRNAs": "26", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Magnetospirillum gryphiswaldense", "strain": "strain=MSR-1", "accession": "GCA_002995515.1", "taxid": 55518, "species_taxid": 55518, "relation_to_type": "type", "validated": true, "ani": 76.0163, "matched_fragments": 75, "total_fragments": 918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Magnetospirillum gryphiswaldense", "strain": "strain=MSR-1", "accession": "GCA_000513295.1", "taxid": 55518, "species_taxid": 55518, "relation_to_type": "type", "validated": true, "ani": 75.9925, "matched_fragments": 83, "total_fragments": 918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanibaculum pacificum", "strain": "strain=MCCC 1A02656", "accession": "GCA_001618175.1", "taxid": 580166, "species_taxid": 580166, "relation_to_type": "type", "validated": true, "ani": 75.6499, "matched_fragments": 64, "total_fragments": 918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Magnetospirillum moscoviense", "strain": "strain=BB-1", "accession": "GCA_001650635.1", "taxid": 1437059, "species_taxid": 1437059, "relation_to_type": "type", "validated": true, "ani": 75.5816, "matched_fragments": 93, "total_fragments": 918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Magnetospirillum aberrantis", "strain": "strain=SpK", "accession": "GCA_011022235.1", "taxid": 1105283, "species_taxid": 1105283, "relation_to_type": "type", "validated": true, "ani": 75.4836, "matched_fragments": 82, "total_fragments": 918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Magnetospirillum caucaseum", "strain": "strain=SO-1", "accession": "GCA_000342045.1", "taxid": 1244869, "species_taxid": 1244869, "relation_to_type": "type", "validated": true, "ani": 75.4725, "matched_fragments": 88, "total_fragments": 918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanibaculum indicum", "strain": "strain=P24", "accession": "GCA_000299935.1", "taxid": 526216, "species_taxid": 526216, "relation_to_type": "type", "validated": true, "ani": 75.4239, "matched_fragments": 61, "total_fragments": 918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum oleiclasticum", "strain": "strain=RWY-5-1-1", "accession": "GCA_013423485.1", "taxid": 2735135, "species_taxid": 2735135, "relation_to_type": "type", "validated": true, "ani": 75.4101, "matched_fragments": 79, "total_fragments": 918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Skermanella mucosa", "strain": "strain=KEMB 2255-438", "accession": "GCA_016765655.2", "taxid": 1789672, "species_taxid": 1789672, "relation_to_type": "type", "validated": true, "ani": 75.3867, "matched_fragments": 71, "total_fragments": 918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Skermanella aerolata", "strain": "strain=5416T-32", "accession": "GCA_000936425.1", "taxid": 393310, "species_taxid": 393310, "relation_to_type": "type", "validated": true, "ani": 75.3325, "matched_fragments": 70, "total_fragments": 918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum ramasamyi", "strain": "strain=M2T2B2", "accession": "GCA_003233655.1", "taxid": 682998, "species_taxid": 682998, "relation_to_type": "type", "validated": true, "ani": 75.3156, "matched_fragments": 88, "total_fragments": 918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hypericibacter adhaerens", "strain": "strain=R5959", "accession": "GCA_008728835.1", "taxid": 2602016, "species_taxid": 2602016, "relation_to_type": "type", "validated": true, "ani": 75.2919, "matched_fragments": 72, "total_fragments": 918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Skermanella pratensis", "strain": "strain=W17", "accession": "GCA_008843145.1", "taxid": 2233999, "species_taxid": 2233999, "relation_to_type": "type", "validated": true, "ani": 75.2301, "matched_fragments": 66, "total_fragments": 918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseospirillum parvum", "strain": "strain=930I", "accession": "GCA_900100455.1", "taxid": 83401, "species_taxid": 83401, "relation_to_type": "type", "validated": true, "ani": 75.1694, "matched_fragments": 56, "total_fragments": 918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Telmatospirillum siberiense", "strain": "strain=26-4b1", "accession": "GCA_002845745.1", "taxid": 382514, "species_taxid": 382514, "relation_to_type": "type", "validated": true, "ani": 75.1638, "matched_fragments": 56, "total_fragments": 918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum cavernae", "strain": "strain=K2W22B-5", "accession": "GCA_003590795.1", "taxid": 2320860, "species_taxid": 2320860, "relation_to_type": "type", "validated": true, "ani": 75.1558, "matched_fragments": 83, "total_fragments": 918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobrevis albus", "strain": "strain=L22", "accession": "GCA_015904235.1", "taxid": 2793297, "species_taxid": 2793297, "relation_to_type": "type", "validated": true, "ani": 75.1193, "matched_fragments": 62, "total_fragments": 918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium manausense", "strain": "strain=BR 3351", "accession": "GCA_001440035.1", "taxid": 989370, "species_taxid": 989370, "relation_to_type": "suspected-type", "validated": true, "ani": 75.0232, "matched_fragments": 52, "total_fragments": 918, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.37, 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"f__Casp-alpha2", "g__Casp-alpha2", "s__Casp-alpha2 sp013203955", "Bacteria", "Pseudomonadota", "Alphaproteobacteria", "Rhodospirillales", "A", "Casp-alpha2", "Casp-alpha2", "Casp-alpha2", "sp013203955" ], "_meo": [ { "id": "MEO_0000024", "label": "lake" }, { "id": "MEO_0001256", "label": "arctic" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }