{
    "type": "genome",
    "identifier": "GCA_013205255.1",
    "organism": "Cyanobacteria bacterium bin.275",
    "title": "Cyanobacteria bacterium bin.275",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Universite Laval",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_013205255.1",
        "bioproject": "PRJNA616293",
        "biosample": "SAMN14944507",
        "wgs_master": "JABMNF000000000.1",
        "refseq_category": "na",
        "taxid": "2773159",
        "species_taxid": "2773159",
        "organism_name": "Cyanobacteria bacterium bin.275",
        "infraspecific_name": "",
        "isolate": "bin.275",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/06/01",
        "asm_name": "ASM1320525v1",
        "submitter": "Universite Laval",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/205/255/GCA_013205255.1_ASM1320525v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-06-01",
    "dateModified": "2020-06-01",
    "datePublished": "2020-06-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Cyanobacteria bacterium bin.275"
        ],
        "sample_taxid": [
            "2773159"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada:Ellesmere Island, Lake A"
        ],
        "sample_host_location_id": [],
        "data_size": "0.659 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 75.0,
        "contamination": 0.52,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2346000",
        "Number of Sequences": "473",
        "Longest Sequences (bp)": "32724",
        "N50 (bp)": "5784",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "64.6",
        "Number of CDSs": "2135",
        "Average Protein Length": "250.5",
        "Coding Ratio (%)": "68.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "27",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Synechococcus lacustris",
                "strain": "strain=Tous",
                "accession": "GCA_003011125.1",
                "taxid": 2116544,
                "species_taxid": 2116544,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.4621,
                "matched_fragments": 67,
                "total_fragments": 517,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parasynechococcus marenigrum",
                "strain": "strain=WH 8102",
                "accession": "GCA_000195975.1",
                "taxid": 2881428,
                "species_taxid": 2881428,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2687,
                "matched_fragments": 128,
                "total_fragments": 517,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ideonella livida",
                "strain": "strain=TBM-1",
                "accession": "GCA_010499455.1",
                "taxid": 2707176,
                "species_taxid": 2707176,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8764,
                "matched_fragments": 54,
                "total_fragments": 517,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 75.0,
            "contamination": 0.52,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_013205255.1",
                "gtdb_species": "s__Cyanobium_A sp013205255",
                "ani": 99.9999,
                "matched_fragments": 503,
                "total_fragments": 517,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Cyanobium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_015840335.1",
                "gtdb_species": "s__Cyanobium_A sp015840335",
                "ani": 94.183,
                "matched_fragments": 409,
                "total_fragments": 517,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Cyanobium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016882385.1",
                "gtdb_species": "s__Cyanobium_A sp016882385",
                "ani": 83.6943,
                "matched_fragments": 222,
                "total_fragments": 517,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Cyanobium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014697415.1",
                "gtdb_species": "s__Cyanobium_A sp014697415",
                "ani": 83.5636,
                "matched_fragments": 313,
                "total_fragments": 517,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Cyanobium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002252665.1",
                "gtdb_species": "s__Cyanobium_A sp002252665",
                "ani": 83.4659,
                "matched_fragments": 326,
                "total_fragments": 517,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Cyanobium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003011885.1",
                "gtdb_species": "s__Cyanobium_A usitatum",
                "ani": 82.4802,
                "matched_fragments": 307,
                "total_fragments": 517,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Cyanobium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016882415.1",
                "gtdb_species": "s__Vulcanococcus sp016882415",
                "ani": 80.1909,
                "matched_fragments": 130,
                "total_fragments": 517,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Vulcanococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002252675.1",
                "gtdb_species": "s__Cyanobium sp002252675",
                "ani": 79.9652,
                "matched_fragments": 260,
                "total_fragments": 517,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Cyanobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.52",
                "min_intra_species_ani": "95.99",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_016882545.1",
                "gtdb_species": "s__Vulcanococcus sp016882545",
                "ani": 79.7706,
                "matched_fragments": 186,
                "total_fragments": 517,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Vulcanococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003249115.1",
                "gtdb_species": "s__QBMD01 sp003249115",
                "ani": 78.7407,
                "matched_fragments": 212,
                "total_fragments": 517,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__QBMD01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.24",
                "min_intra_species_ani": "98.24",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Cyanobacteriota",
        "c__Cyanobacteriia",
        "o__PCC-6307",
        "f__Cyanobiaceae",
        "g__Cyanobium_A",
        "s__Cyanobium_A sp013205255"
    ],
    "_genome_taxon": [
        "Cyanobacteria",
        "bacterium",
        "bin.275",
        "d__Bacteria",
        "p__Cyanobacteriota",
        "c__Cyanobacteriia",
        "o__PCC-6307",
        "f__Cyanobiaceae",
        "g__Cyanobium_A",
        "s__Cyanobium_A sp013205255",
        "Bacteria",
        "Cyanobacteriota",
        "Cyanobacteriia",
        "PCC-6307",
        "Cyanobiaceae",
        "Cyanobium",
        "A",
        "Cyanobium",
        "A",
        "sp013205255"
    ],
    "_meo": [
        {
            "id": "MEO_0000024",
            "label": "lake"
        },
        {
            "id": "MEO_0001256",
            "label": "arctic"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}