{
    "type": "genome",
    "identifier": "GCA_013205535.1",
    "organism": "Candidatus Planktophila sp.",
    "title": "Candidatus Planktophila sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Universite Laval",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_013205535.1",
        "bioproject": "PRJNA616293",
        "biosample": "SAMN14944489",
        "wgs_master": "JABMMN000000000.1",
        "refseq_category": "na",
        "taxid": "2175601",
        "species_taxid": "2175601",
        "organism_name": "Candidatus Planktophila sp.",
        "infraspecific_name": "",
        "isolate": "bin.171",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/06/01",
        "asm_name": "ASM1320553v1",
        "submitter": "Universite Laval",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/205/535/GCA_013205535.1_ASM1320553v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-06-01",
    "dateModified": "2020-06-01",
    "datePublished": "2020-06-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Candidatus Planktophila sp."
        ],
        "sample_taxid": [
            "2175601"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada:Ellesmere Island, Lake A"
        ],
        "sample_host_location_id": [],
        "data_size": "0.337 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 77.6,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1166607",
        "Number of Sequences": "77",
        "Longest Sequences (bp)": "47957",
        "N50 (bp)": "25948",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "49.6",
        "Number of CDSs": "1124",
        "Average Protein Length": "313.8",
        "Coding Ratio (%)": "90.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "17",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 77.6,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_013205535.1",
                "gtdb_species": "s__Planktophila sp013205535",
                "ani": 100.0,
                "matched_fragments": 344,
                "total_fragments": 348,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.80",
                "min_intra_species_ani": "96.80",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_005800815.1",
                "gtdb_species": "s__Planktophila sp005800815",
                "ani": 87.6886,
                "matched_fragments": 302,
                "total_fragments": 348,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.78",
                "min_intra_species_ani": "99.78",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_009702835.1",
                "gtdb_species": "s__Planktophila sp009702835",
                "ani": 79.5418,
                "matched_fragments": 148,
                "total_fragments": 348,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.51",
                "min_intra_species_ani": "97.96",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_009691145.1",
                "gtdb_species": "s__Planktophila sp009691145",
                "ani": 79.14,
                "matched_fragments": 160,
                "total_fragments": 348,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015660815.1",
                "gtdb_species": "s__Planktophila sp015660815",
                "ani": 78.1343,
                "matched_fragments": 103,
                "total_fragments": 348,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903832395.1",
                "gtdb_species": "s__Planktophila sp903832395",
                "ani": 77.7229,
                "matched_fragments": 111,
                "total_fragments": 348,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.52",
                "min_intra_species_ani": "97.23",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_009698675.1",
                "gtdb_species": "s__Planktophila sp009698675",
                "ani": 77.4157,
                "matched_fragments": 110,
                "total_fragments": 348,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.92",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_009702845.1",
                "gtdb_species": "s__Planktophila sp009702845",
                "ani": 77.4047,
                "matched_fragments": 85,
                "total_fragments": 348,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903921405.1",
                "gtdb_species": "s__Planktophila sp903921405",
                "ani": 77.2994,
                "matched_fragments": 104,
                "total_fragments": 348,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.46",
                "min_intra_species_ani": "97.48",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCA_018970885.1",
                "gtdb_species": "s__Planktophila sp018970885",
                "ani": 77.2119,
                "matched_fragments": 53,
                "total_fragments": 348,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002288225.1",
                "gtdb_species": "s__Planktophila dulcis",
                "ani": 76.4625,
                "matched_fragments": 50,
                "total_fragments": 348,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.64",
                "min_intra_species_ani": "97.42",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Nanopelagicales",
        "f__Nanopelagicaceae",
        "g__Planktophila",
        "s__Planktophila sp013205535"
    ],
    "_genome_taxon": [
        "Candidatus",
        "Planktophila",
        "sp.",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Nanopelagicales",
        "f__Nanopelagicaceae",
        "g__Planktophila",
        "s__Planktophila sp013205535",
        "Bacteria",
        "Actinomycetota",
        "Actinomycetes",
        "Nanopelagicales",
        "Nanopelagicaceae",
        "Planktophila",
        "Planktophila",
        "sp013205535"
    ],
    "_meo": [
        {
            "id": "MEO_0000024",
            "label": "lake"
        },
        {
            "id": "MEO_0001256",
            "label": "arctic"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}