{ "type": "genome", "identifier": "GCA_013205565.1", "organism": "Alcaligenaceae bacterium", "title": "Alcaligenaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Universite Laval", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013205565.1", "bioproject": "PRJNA616293", "biosample": "SAMN14944488", "wgs_master": "JABMMM000000000.1", "refseq_category": "na", "taxid": "2021368", "species_taxid": "2021368", "organism_name": "Alcaligenaceae bacterium", "infraspecific_name": "", "isolate": "bin.388", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/01", "asm_name": "ASM1320556v1", "submitter": "Universite Laval", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/205/565/GCA_013205565.1_ASM1320556v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-01", "dateModified": "2020-06-01", "datePublished": "2020-06-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Alcaligenaceae bacterium" ], "sample_taxid": [ "2021368" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada:Ellesmere Island, Lake A" ], "sample_host_location_id": [], "data_size": "0.981 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 93.06, "contamination": 2.08, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3415065", "Number of Sequences": "337", "Longest Sequences (bp)": "112587", "N50 (bp)": "15487", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.0", "Number of CDSs": "2944", "Average Protein Length": "316.5", "Coding Ratio (%)": "81.8", "Number of rRNAs": "0", "Number of tRNAs": "22", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Zwartia hollandica", "strain": "strain=LF4-65", "accession": "GCA_019923725.1", "taxid": 324606, "species_taxid": 324606, "relation_to_type": "type", "validated": true, "ani": 77.6184, "matched_fragments": 133, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sheuella amnicola", "strain": "strain=NBD-18", "accession": "GCA_010499255.1", "taxid": 2707330, "species_taxid": 2707330, "relation_to_type": "type", "validated": true, "ani": 77.0558, "matched_fragments": 96, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jezberella montanilacus", "strain": "strain=MWH-P2sevCIIIb", "accession": "GCA_003003055.1", "taxid": 323426, "species_taxid": 323426, "relation_to_type": "type", "validated": true, "ani": 76.9183, "matched_fragments": 87, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter aestuarii", "strain": "strain=KS-M25", "accession": "GCA_009866805.1", "taxid": 2511204, "species_taxid": 2511204, "relation_to_type": "type", "validated": true, "ani": 76.4777, "matched_fragments": 50, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella bronchiseptica", "strain": "strain=NCTC452", "accession": "GCA_900445725.1", "taxid": 518, "species_taxid": 518, "relation_to_type": "suspected-type", "validated": true, "ani": 75.8966, "matched_fragments": 52, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter mucicolens", "strain": "strain=LMG 26685", "accession": "GCA_902859725.1", "taxid": 1389922, "species_taxid": 1389922, "relation_to_type": "type", "validated": true, "ani": 75.8813, "matched_fragments": 53, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella parapertussis", "strain": "strain=FDAARGOS_1541", "accession": "GCA_020735925.1", "taxid": 519, "species_taxid": 519, "relation_to_type": "suspected-type", "validated": true, "ani": 75.8276, "matched_fragments": 52, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter spanius", "strain": "strain=DSM 23806", "accession": "GCA_002812705.1", "taxid": 217203, "species_taxid": 217203, "relation_to_type": "suspected-type", "validated": true, "ani": 75.7955, "matched_fragments": 52, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter spanius", "strain": "strain=LMG 5911", "accession": "GCA_902859605.1", "taxid": 217203, "species_taxid": 217203, "relation_to_type": "suspected-type", "validated": true, "ani": 75.7255, "matched_fragments": 53, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 93.06, "contamination": 2.08, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_013205565.1", "gtdb_species": "s__NBD-18 sp013205565", "ani": 100.0, "matched_fragments": 951, "total_fragments": 966, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__NBD-18", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_002737415.1", "gtdb_species": "s__NBD-18 sp002737415", "ani": 93.5934, "matched_fragments": 841, "total_fragments": 966, "gtdb_taxonomy": 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"Burkholderiaceae", "Zwartia", "Zwartia", "sp013205565" ], "_meo": [ { "id": "MEO_0000024", "label": "lake" }, { "id": "MEO_0001256", "label": "arctic" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }