{ "type": "genome", "identifier": "GCA_013205645.1", "organism": "Polaromonas sp.", "title": "Polaromonas sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Universite Laval", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013205645.1", "bioproject": "PRJNA616293", "biosample": "SAMN14944483", "wgs_master": "JABMMH000000000.1", "refseq_category": "na", "taxid": "1869339", "species_taxid": "1869339", "organism_name": "Polaromonas sp.", "infraspecific_name": "", "isolate": "bin.87", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/01", "asm_name": "ASM1320564v1", "submitter": "Universite Laval", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/205/645/GCA_013205645.1_ASM1320564v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-01", "dateModified": "2020-06-01", "datePublished": "2020-06-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Polaromonas sp." ], "sample_taxid": [ "1869339" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada:Ellesmere Island, Lake A" ], "sample_host_location_id": [], "data_size": "0.723 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 58.71, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2549938", "Number of Sequences": "449", "Longest Sequences (bp)": "49865", "N50 (bp)": "6885", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.8", "Number of CDSs": "2141", "Average Protein Length": "280.7", "Coding Ratio (%)": "70.7", "Number of rRNAs": "0", "Number of tRNAs": "16", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Polaromonas naphthalenivorans", "strain": "strain=CJ2", "accession": "GCA_000015505.1", "taxid": 216465, "species_taxid": 216465, "relation_to_type": "type", "validated": true, "ani": 78.4173, "matched_fragments": 242, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaromonas jejuensis", "strain": "strain=NBRC 106434", "accession": "GCA_001598235.1", "taxid": 457502, "species_taxid": 457502, "relation_to_type": "type", "validated": true, "ani": 78.1469, "matched_fragments": 250, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaromonas eurypsychrophila", "strain": "strain=CGMCC 1.15322", "accession": "GCA_014641715.1", "taxid": 1614635, "species_taxid": 1614635, "relation_to_type": "type", "validated": true, "ani": 78.0577, "matched_fragments": 243, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaromonas vacuolata", "strain": "strain=KCTC 22033", "accession": "GCA_012584515.1", "taxid": 37448, "species_taxid": 37448, "relation_to_type": "type", "validated": true, "ani": 77.435, "matched_fragments": 116, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans radicicola", "strain": "strain=JUR4", "accession": "GCA_014837235.1", "taxid": 2771427, "species_taxid": 2771427, "relation_to_type": "type", "validated": true, "ani": 77.2779, "matched_fragments": 139, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhodoferax soli", "strain": "strain=DSM 21634", "accession": "GCA_003337555.1", "taxid": 545864, "species_taxid": 545864, "relation_to_type": "type", "validated": true, "ani": 77.1666, "matched_fragments": 157, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simplicispira metamorpha", "strain": "strain=NBRC 13960", "accession": "GCA_003568725.1", "taxid": 80881, "species_taxid": 80881, "relation_to_type": "type", "validated": true, "ani": 77.1594, "matched_fragments": 132, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simplicispira metamorpha", "strain": "strain=DSM 1837", "accession": "GCA_004341365.1", "taxid": 80881, "species_taxid": 80881, "relation_to_type": "type", "validated": true, "ani": 77.1444, "matched_fragments": 133, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curvibacter lanceolatus", "strain": "strain=ATCC 14669", "accession": "GCA_000381265.1", "taxid": 86182, "species_taxid": 86182, "relation_to_type": "type", "validated": true, "ani": 77.12, "matched_fragments": 155, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga aromaticivorans", "strain": "strain=D2P1", "accession": "GCA_013387465.1", "taxid": 2610898, "species_taxid": 2610898, "relation_to_type": "type", "validated": true, "ani": 77.0954, "matched_fragments": 161, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax kalamii", "strain": "strain=KNDSW-TSA6", "accession": "GCA_002245625.1", "taxid": 2004485, "species_taxid": 2004485, "relation_to_type": "type", "validated": true, "ani": 77.0903, "matched_fragments": 149, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curvibacter gracilis", "strain": "strain=ATCC BAA-807", "accession": "GCA_000518645.1", "taxid": 230310, "species_taxid": 230310, "relation_to_type": "type", "validated": true, "ani": 77.0272, "matched_fragments": 155, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans parvus", "strain": "strain=II-B4", "accession": "GCA_003063455.1", "taxid": 540061, "species_taxid": 540061, "relation_to_type": "type", "validated": true, "ani": 76.9551, "matched_fragments": 147, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhodoferax aquiterrae", "strain": "strain=KCTC 23314", "accession": "GCA_014652235.1", "taxid": 747304, "species_taxid": 747304, "relation_to_type": "type", "validated": true, "ani": 76.951, "matched_fragments": 155, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga pseudoflava", "strain": "strain=NBRC 102511", "accession": "GCA_001592285.1", "taxid": 47421, "species_taxid": 47421, "relation_to_type": "type", "validated": true, "ani": 76.9134, "matched_fragments": 144, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax lacus", "strain": "strain=IMCC26218", "accession": "GCA_003415675.1", "taxid": 2184758, "species_taxid": 2184758, "relation_to_type": "type", "validated": true, "ani": 76.8963, "matched_fragments": 132, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax temperans", "strain": "strain=DSM 7270", "accession": "GCA_006716905.1", "taxid": 80878, "species_taxid": 80878, "relation_to_type": "type", "validated": true, "ani": 76.8705, "matched_fragments": 147, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax facilis", "strain": "strain=DSM 649", "accession": "GCA_023913775.1", "taxid": 12917, "species_taxid": 12917, "relation_to_type": "type", "validated": true, "ani": 76.8549, "matched_fragments": 149, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter algicola", "strain": "strain=CrO1", "accession": "GCA_016641735.1", "taxid": 2795217, "species_taxid": 2795217, "relation_to_type": "type", "validated": true, "ani": 76.8484, "matched_fragments": 124, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax valerianellae", "strain": "strain=DSM 16619", "accession": "GCA_900102625.1", "taxid": 187868, "species_taxid": 187868, "relation_to_type": "type", "validated": true, "ani": 76.7757, "matched_fragments": 128, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter humi", "strain": "strain=18x22-1", "accession": "GCA_004681975.1", "taxid": 2530451, "species_taxid": 2530451, "relation_to_type": "type", "validated": true, "ani": 76.7123, "matched_fragments": 133, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus montanus", "strain": "strain=HS", "accession": "GCA_013426955.1", "taxid": 522889, "species_taxid": 522889, "relation_to_type": "type", "validated": true, "ani": 76.6167, "matched_fragments": 100, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus montanus", "strain": "strain=DSM 21226", "accession": "GCA_013410775.1", "taxid": 522889, "species_taxid": 522889, "relation_to_type": "type", "validated": true, "ani": 76.6135, "matched_fragments": 100, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Delftia acidovorans", "strain": "strain=FDAARGOS_997", "accession": "GCA_016127415.1", "taxid": 80866, "species_taxid": 80866, "relation_to_type": "type", "validated": true, "ani": 76.6121, "matched_fragments": 134, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Delftia acidovorans", "strain": "strain=NBRC 14950", "accession": "GCA_001598795.1", "taxid": 80866, "species_taxid": 80866, "relation_to_type": "type", "validated": true, "ani": 76.5848, "matched_fragments": 135, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella azotifigens", "strain": "strain=DSM 21438", "accession": "GCA_006519715.1", "taxid": 513160, "species_taxid": 513160, "relation_to_type": "type", "validated": true, "ani": 76.4879, "matched_fragments": 85, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ottowia testudinis", "strain": "strain=27C", "accession": "GCA_017498525.1", "taxid": 2816950, "species_taxid": 2816950, "relation_to_type": "type", "validated": true, "ani": 76.4507, "matched_fragments": 138, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas koreensis", "strain": "strain=KCTC 12005", "accession": "GCA_021026195.1", "taxid": 160825, "species_taxid": 160825, "relation_to_type": "type", "validated": true, "ani": 76.2502, "matched_fragments": 117, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 58.71, "contamination": 8.33, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_013205645.1", "gtdb_species": "s__Polaromonas sp013205645", "ani": 100.0, "matched_fragments": 603, "total_fragments": 616, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polaromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_903941205.1", "gtdb_species": "s__Polaromonas sp903941205", "ani": 79.1688, "matched_fragments": 291, "total_fragments": 616, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polaromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002379095.1", "gtdb_species": "s__Polaromonas sp002379095", "ani": 78.5524, "matched_fragments": 257, "total_fragments": 616, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polaromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002278925.1", "gtdb_species": "s__Polaromonas sp002278925", "ani": 78.4468, "matched_fragments": 260, "total_fragments": 616, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polaromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", 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"gtdb_species": "s__Polaromonas jejuensis", "ani": 78.1615, "matched_fragments": 249, "total_fragments": 616, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polaromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000709345.1", "gtdb_species": "s__Polaromonas glacialis", "ani": 78.1567, "matched_fragments": 258, "total_fragments": 616, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polaromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903844825.1", "gtdb_species": "s__Polaromonas sp903844825", "ani": 77.9933, "matched_fragments": 223, "total_fragments": 616, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polaromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903926695.1", "gtdb_species": "s__Polaromonas sp903926695", "ani": 77.6242, "matched_fragments": 141, "total_fragments": 616, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polaromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003097105.1", "gtdb_species": "s__Rhodoferax_B sp003097105", "ani": 77.518, 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