{ "type": "genome", "identifier": "GCA_013213965.1", "organism": "Verrucomicrobiales bacterium", "title": "Verrucomicrobiales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Simons Collaboration on Ocean Processes and Ecology (SCOPE)", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013213965.1", "bioproject": "PRJNA482655", "biosample": "SAMN14675805", "wgs_master": "JABSSR000000000.1", "refseq_category": "na", "taxid": "2026801", "species_taxid": "2026801", "organism_name": "Verrucomicrobiales bacterium", "infraspecific_name": "", "isolate": "DT_117", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/02", "asm_name": "ASM1321396v1", "submitter": "Simons Collaboration on Ocean Processes and Ecology (SCOPE)", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/213/965/GCA_013213965.1_ASM1321396v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-02", "dateModified": "2020-06-02", "datePublished": "2020-06-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Verrucomicrobiales bacterium" ], "sample_taxid": [ "2026801" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean: North Pacific Gyre, Station ALOHA" ], "sample_host_location_id": [], "data_size": "0.948 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 93.66, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", 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"total_fragments": 809, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__DEV007;g__EC70", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.95", "min_intra_species_ani": "98.84", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.172, "cell_length": 0.119, "doubling_h": null, "growth_tmp": 28.357, "optimum_tmp": 29.489, "optimum_ph": 7.27, "genome_size": 4633668.762, "gc_content": 57.889, "coding_genes": 2373.375, "rRNA16S_genes": 3.0, "tRNA_genes": 50.5, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.076, "anaerobic_respiration": 0.076, "aerobic_respiration": 0.846, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.875, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, 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