{ "type": "genome", "identifier": "GCA_013288945.1", "organism": "Bacteroidota bacterium", "title": "Bacteroidota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Massachusetts Amherst", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013288945.1", "bioproject": "PRJNA608716", "biosample": "SAMN14214717", "wgs_master": "JABDAZ000000000.1", "refseq_category": "na", "taxid": "1898104", "species_taxid": "1898104", "organism_name": "Bacteroidota bacterium", "infraspecific_name": "", "isolate": "BWOrgHeat_Nextera79_MAG2", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/08", "asm_name": "ASM1328894v1", "submitter": "University of Massachusetts Amherst", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/288/945/GCA_013288945.1_ASM1328894v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-08", "dateModified": "2020-06-08", "datePublished": "2020-06-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Bacteroidota bacterium" ], "sample_taxid": [ "1898104" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Massachusetts" ], "sample_host_location_id": [], "data_size": "0.843 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 71.12, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3031694", "Number of Sequences": "116", "Longest Sequences (bp)": "192562", "N50 (bp)": "54893", "Gap Ratio (%)": "0.019461", "GCcontent (%)": "35.4", "Number of CDSs": "2577", "Average Protein Length": "322.7", "Coding Ratio (%)": "82.3", "Number of rRNAs": "3", "Number of tRNAs": "17", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lacibacter cauensis", "strain": "strain=CGMCC 1.7271", "accession": "GCA_007830055.1", "taxid": 510947, "species_taxid": 510947, "relation_to_type": "type", "validated": true, "ani": 76.7077, "matched_fragments": 52, "total_fragments": 952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niabella ginsengisoli", "strain": "strain=GR10-1", "accession": "GCA_022513635.1", "taxid": 522298, "species_taxid": 522298, "relation_to_type": "type", "validated": true, "ani": 76.3133, "matched_fragments": 54, "total_fragments": 952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ginsengibacter hankyongi", "strain": "strain=BR5-29", "accession": "GCA_008710285.1", "taxid": 2607284, "species_taxid": 2607284, "relation_to_type": "type", "validated": true, "ani": 76.2205, "matched_fragments": 97, "total_fragments": 952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacibacter luteus", "strain": "strain=TTM-7", "accession": "GCA_004118265.1", "taxid": 2508719, "species_taxid": 2508719, "relation_to_type": "type", "validated": true, "ani": 75.9686, "matched_fragments": 66, "total_fragments": 952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella caeni", "strain": "strain=HX-16-21", "accession": "GCA_004834005.1", "taxid": 2569763, "species_taxid": 2569763, "relation_to_type": "type", "validated": true, "ani": 75.8767, "matched_fragments": 54, "total_fragments": 952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agriterribacter humi", "strain": "strain=YJ03", "accession": "GCA_009192765.1", "taxid": 1104781, "species_taxid": 1104781, "relation_to_type": "type", "validated": true, "ani": 75.8371, "matched_fragments": 69, "total_fragments": 952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrotalea flava", "strain": "strain=CCUG 51397", "accession": "GCA_001623405.1", "taxid": 714549, "species_taxid": 714549, "relation_to_type": "suspected-type", "validated": true, "ani": 75.814, "matched_fragments": 52, "total_fragments": 952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanamia caeni", "strain": "strain=BO-59", "accession": "GCA_003721595.1", "taxid": 2294116, "species_taxid": 2294116, "relation_to_type": "type", "validated": true, "ani": 75.697, "matched_fragments": 65, "total_fragments": 952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pinibacter aurantiacus", "strain": "strain=MAH-26", "accession": "GCA_019130065.1", "taxid": 2851599, "species_taxid": 2851599, "relation_to_type": "type", "validated": true, "ani": 75.5333, "matched_fragments": 59, "total_fragments": 952, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 71.12, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_013288945.1", "gtdb_species": "s__Puia sp013288945", "ani": 100.0, "matched_fragments": 947, "total_fragments": 952, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Puia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_018266575.1", "gtdb_species": "s__Puia sp018266575", "ani": 77.304, "matched_fragments": 314, "total_fragments": 952, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Puia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903927975.1", "gtdb_species": "s__Puia sp903927975", "ani": 76.9497, "matched_fragments": 235, "total_fragments": 952, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Puia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.89", "min_intra_species_ani": "99.89", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002390845.1", "gtdb_species": "s__Panacibacter sp002390845", "ani": 76.4863, "matched_fragments": 99, "total_fragments": 952, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Panacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016715365.1", "gtdb_species": "s__Ferruginibacter sp016715365", "ani": 76.4573, "matched_fragments": 87, "total_fragments": 952, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.79", "min_intra_species_ani": "98.54", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_903870685.1", "gtdb_species": "s__CAILAF01 sp903870685", "ani": 76.3746, "matched_fragments": 126, "total_fragments": 952, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__CAILAF01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.70", "min_intra_species_ani": "99.46", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.91", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_016706055.1", "gtdb_species": "s__JJ008 sp016706055", "ani": 76.3182, "matched_fragments": 69, "total_fragments": 952, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__JJ008", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.30", "min_intra_species_ani": "99.30", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903832075.1", "gtdb_species": "s__CAILAF01 sp903832075", "ani": 76.2302, "matched_fragments": 85, "total_fragments": 952, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__CAILAF01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004295245.1", "gtdb_species": "s__JACMLD01 sp004295245", "ani": 76.1925, "matched_fragments": 77, "total_fragments": 952, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__JACMLD01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.79", "min_intra_species_ani": "98.79", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016713965.1", "gtdb_species": "s__Ferruginibacter sp016713965", "ani": 76.0899, "matched_fragments": 70, "total_fragments": 952, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018267615.1", "gtdb_species": "s__Puia sp018267615", "ani": 76.065, "matched_fragments": 149, "total_fragments": 952, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Puia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018266455.1", "gtdb_species": "s__Puia sp018266455", "ani": 75.8787, "matched_fragments": 120, "total_fragments": 952, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Puia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005882315.1", "gtdb_species": "s__VBAR01 sp005882315", "ani": 75.8735, "matched_fragments": 68, "total_fragments": 952, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__VBAR01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013141115.1", "gtdb_species": "s__Ferruginibacter sp013141115", "ani": 75.728, "matched_fragments": 106, "total_fragments": 952, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005798905.1", "gtdb_species": "s__VBAS01 sp005798905", "ani": 75.5369, "matched_fragments": 63, "total_fragments": 952, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__VBAS01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_015654695.1", "gtdb_species": "s__VBAT01 sp015654695", "ani": 75.3715, "matched_fragments": 54, "total_fragments": 952, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__VBAT01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Chitinophagales", "f__Chitinophagaceae", "g__Puia", "s__Puia sp013288945" ], "_genome_taxon": [ "Bacteroidota", "bacterium", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Chitinophagales", "f__Chitinophagaceae", "g__Puia", "s__Puia sp013288945", "Bacteria", "Bacteroidota", "Bacteroidia", "Chitinophagales", "Chitinophagaceae", "Puia", "Puia", "sp013288945" ], "_meo": [ { "id": "MEO_0000007", "label": "soil" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }