{ "type": "genome", "identifier": "GCA_013289015.1", "organism": "Bacteroidota bacterium", "title": "Bacteroidota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Massachusetts Amherst", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013289015.1", "bioproject": "PRJNA608716", "biosample": "SAMN14214713", "wgs_master": "JABDAV000000000.1", "refseq_category": "na", "taxid": "1898104", "species_taxid": "1898104", "organism_name": "Bacteroidota bacterium", "infraspecific_name": "", "isolate": "BWOrgHeat_Nextera19_MAG5", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/08", "asm_name": "ASM1328901v1", "submitter": "University of Massachusetts Amherst", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/289/015/GCA_013289015.1_ASM1328901v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-08", "dateModified": "2020-06-08", "datePublished": "2020-06-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Bacteroidota bacterium" ], "sample_taxid": [ "1898104" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Massachusetts" ], "sample_host_location_id": [], "data_size": "1.012 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 59.72, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3589808", "Number of Sequences": "189", "Longest Sequences (bp)": "98894", "N50 (bp)": "29512", "Gap Ratio (%)": "0.031199", "GCcontent (%)": "37.6", "Number of CDSs": "2888", "Average Protein Length": "330.0", "Coding Ratio (%)": "79.7", "Number of rRNAs": "0", "Number of tRNAs": "22", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Parafilimonas terrae", "strain": "strain=DSM 28286", "accession": "GCA_900115755.1", "taxid": 1465490, "species_taxid": 1465490, "relation_to_type": "type", "validated": true, "ani": 77.4544, "matched_fragments": 309, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Panacibacter ginsenosidivorans", "strain": "strain=Gsoil1550", "accession": "GCA_007971225.1", "taxid": 1813871, "species_taxid": 1813871, "relation_to_type": "type", "validated": true, "ani": 76.1943, "matched_fragments": 112, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Foetidibacter luteolus", "strain": "strain=YG09", "accession": "GCA_009650435.1", "taxid": 2608880, "species_taxid": 2608880, "relation_to_type": "type", "validated": true, "ani": 75.7165, "matched_fragments": 55, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ferruginibacter albus", "strain": "strain=KIS38-8", "accession": "GCA_020042285.1", "taxid": 2875540, "species_taxid": 2875540, "relation_to_type": "type", "validated": true, "ani": 75.6676, "matched_fragments": 51, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Panacibacter microcysteis", "strain": "strain=DH6", "accession": "GCA_015831355.1", "taxid": 2793269, "species_taxid": 2793269, "relation_to_type": "type", "validated": true, "ani": 75.6026, "matched_fragments": 71, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnovirga soli", "strain": "strain=KCS-6", "accession": "GCA_013106755.1", "taxid": 2656915, "species_taxid": 2656915, "relation_to_type": "type", "validated": true, "ani": 75.281, "matched_fragments": 71, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrotalea flava", "strain": "strain=CCUG 51397", "accession": "GCA_001623405.1", "taxid": 714549, "species_taxid": 714549, "relation_to_type": "suspected-type", "validated": true, "ani": 75.166, "matched_fragments": 50, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 59.72, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_013289015.1", "gtdb_species": "s__Parafilimonas sp013289015", "ani": 100.0, "matched_fragments": 1084, "total_fragments": 1098, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Parafilimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_013286425.1", "gtdb_species": "s__Parafilimonas sp013286425", "ani": 82.8321, "matched_fragments": 462, "total_fragments": 1098, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Parafilimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013285855.1", "gtdb_species": "s__Parafilimonas sp013285855", "ani": 78.7605, "matched_fragments": 305, "total_fragments": 1098, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Parafilimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.41", "min_intra_species_ani": "99.41", "mean_intra_species_af": "0.64", "min_intra_species_af": "0.64", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900115755.1", "gtdb_species": "s__Parafilimonas terrae", "ani": 77.4636, "matched_fragments": 310, "total_fragments": 1098, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Parafilimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903642275.1", "gtdb_species": "s__Parafilimonas sp903642275", "ani": 77.1594, "matched_fragments": 265, "total_fragments": 1098, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Parafilimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018268035.1", "gtdb_species": "s__Parafilimonas sp018268035", "ani": 76.8966, "matched_fragments": 204, "total_fragments": 1098, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Parafilimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903904335.1", "gtdb_species": "s__CAILAF01 sp903904335", "ani": 75.4893, "matched_fragments": 76, "total_fragments": 1098, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__CAILAF01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.62", "min_intra_species_ani": "96.62", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.78", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_018267725.1", "gtdb_species": "s__CW01 sp018267725", "ani": 75.3192, "matched_fragments": 55, "total_fragments": 1098, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__CW01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.77", "min_intra_species_ani": "97.12", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 5, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Chitinophagales", "f__Chitinophagaceae", "g__Parafilimonas", "s__Parafilimonas sp013289015" ], "_genome_taxon": [ "Bacteroidota", "bacterium", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Chitinophagales", "f__Chitinophagaceae", "g__Parafilimonas", "s__Parafilimonas sp013289015", "Bacteria", "Bacteroidota", "Bacteroidia", "Chitinophagales", "Chitinophagaceae", "Parafilimonas", "Parafilimonas", "sp013289015" ], "_meo": [ { "id": "MEO_0000007", "label": "soil" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }