{
    "type": "genome",
    "identifier": "GCA_013297765.1",
    "organism": "Cytophagales bacterium",
    "title": "Cytophagales bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Auckland",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_013297765.1",
        "bioproject": "PRJNA555798",
        "biosample": "SAMN12754373",
        "wgs_master": "JAAFID000000000.1",
        "refseq_category": "na",
        "taxid": "2053541",
        "species_taxid": "2053541",
        "organism_name": "Cytophagales bacterium",
        "infraspecific_name": "",
        "isolate": "bin33.maxbin.ball.127",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/06/08",
        "asm_name": "ASM1329776v1",
        "submitter": "University of Auckland",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/297/765/GCA_013297765.1_ASM1329776v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-06-08",
    "dateModified": "2020-06-08",
    "datePublished": "2020-06-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Cytophagales bacterium"
        ],
        "sample_taxid": [
            "2053541"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "New Zealand: Wai-iti river, Nelson"
        ],
        "sample_host_location_id": [],
        "data_size": "1.006 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3558024",
        "Number of Sequences": "290",
        "Longest Sequences (bp)": "63111",
        "N50 (bp)": "17931",
        "Gap Ratio (%)": "0.001967",
        "GCcontent (%)": "37.0",
        "Number of CDSs": "2771",
        "Average Protein Length": "335.0",
        "Coding Ratio (%)": "78.3",
        "Number of rRNAs": "1",
        "Number of tRNAs": "33",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_013297765.1",
                "gtdb_species": "s__REBA01 sp013297765",
                "ani": 100.0,
                "matched_fragments": 1027,
                "total_fragments": 1038,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cytophagaceae;g__REBA01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_004294225.1",
                "gtdb_species": "s__REBA01 sp004294225",
                "ani": 76.8721,
                "matched_fragments": 133,
                "total_fragments": 1038,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cytophagaceae;g__REBA01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.291,
        "cell_length": 0.395,
        "doubling_h": -0.018,
        "growth_tmp": 28.322,
        "optimum_tmp": 28.798,
        "optimum_ph": 7.4,
        "genome_size": 5502654.716,
        "gc_content": 45.15,
        "coding_genes": 4297.673,
        "rRNA16S_genes": 3.19,
        "tRNA_genes": 41.5,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.218,
        "range_salinity": 1.0,
        "facultative_respiration": 0.03,
        "anaerobic_respiration": 0.006,
        "aerobic_respiration": 0.963,
        "mesophilic_range_tmp": 0.913,
        "thermophilic_range_tmp": 0.043,
        "psychrophilic_range_tmp": 0.043,
        "bacillus_cell_shape": 0.969,
        "coccus_cell_shape": 0.015,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.007,
        "spiral_cell_shape": 0.007
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Cytophagales",
        "f__Cytophagaceae",
        "g__REBA01",
        "s__REBA01 sp013297765"
    ],
    "_genome_taxon": [
        "Cytophagales",
        "bacterium",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Cytophagales",
        "f__Cytophagaceae",
        "g__REBA01",
        "s__REBA01 sp013297765",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Cytophagales",
        "Cytophagaceae",
        "REBA01",
        "REBA01",
        "sp013297765"
    ],
    "_meo": [
        {
            "id": "MEO_0000116",
            "label": "biofilm"
        },
        {
            "id": "MEO_0000082",
            "label": "river"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}