{ "type": "genome", "identifier": "GCA_013297945.1", "organism": "Cytophagales bacterium", "title": "Cytophagales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Auckland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013297945.1", "bioproject": "PRJNA555798", "biosample": "SAMN12754365", "wgs_master": "JAAFIZ000000000.1", "refseq_category": "na", "taxid": "2053541", "species_taxid": "2053541", "organism_name": "Cytophagales bacterium", "infraspecific_name": "", "isolate": "bin58.metabat.ball.058", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/08", "asm_name": "ASM1329794v1", "submitter": "University of Auckland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/297/945/GCA_013297945.1_ASM1329794v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-08", "dateModified": "2020-06-08", "datePublished": "2020-06-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Cytophagales bacterium" ], "sample_taxid": [ "2053541" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Zealand: Wai-iti river, Nelson" ], "sample_host_location_id": [], "data_size": "2.005 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "7018518", "Number of Sequences": "155", "Longest Sequences (bp)": "262004", "N50 (bp)": "90599", "Gap Ratio (%)": "0.000142", "GCcontent (%)": "53.7", "Number of CDSs": "5697", "Average Protein Length": "363.6", "Coding Ratio (%)": "88.5", "Number of rRNAs": "0", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rudanella lutea", "strain": "strain=DSM 19387", "accession": "GCA_000383955.1", "taxid": 451374, "species_taxid": 451374, "relation_to_type": "type", "validated": true, "ani": 78.0068, "matched_fragments": 651, "total_fragments": 2263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rudanella paleaurantiibacter", "strain": "strain=HX-22-17", "accession": "GCA_009184635.1", "taxid": 2614655, "species_taxid": 2614655, "relation_to_type": "type", "validated": true, "ani": 77.9561, "matched_fragments": 672, "total_fragments": 2263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma montaniterrae", "strain": "strain=DY10", "accession": "GCA_001988955.1", "taxid": 1178516, "species_taxid": 1178516, "relation_to_type": "type", "validated": true, "ani": 77.242, "matched_fragments": 410, "total_fragments": 2263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma lacussanchae", "strain": "strain=CPCC 100624", "accession": "GCA_005870035.1", "taxid": 1884249, "species_taxid": 1884249, "relation_to_type": "type", "validated": true, "ani": 76.6863, "matched_fragments": 241, "total_fragments": 2263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma sordidisoli", "strain": "strain=TY50", "accession": "GCA_004138325.1", "taxid": 2502893, "species_taxid": 2502893, "relation_to_type": "type", "validated": true, "ani": 76.5433, "matched_fragments": 271, "total_fragments": 2263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fibrella aestuarina", "strain": "strain=BUZ 2", "accession": "GCA_000331105.1", "taxid": 651143, "species_taxid": 651143, "relation_to_type": "type", "validated": true, "ani": 76.4987, "matched_fragments": 343, "total_fragments": 2263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma rigui", "strain": "strain=KCTC 12531", "accession": "GCA_002067135.1", "taxid": 564064, "species_taxid": 564064, "relation_to_type": "type", "validated": true, "ani": 76.4604, "matched_fragments": 254, "total_fragments": 2263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fibrella rubiginis", "strain": "strain=HMF5335", "accession": "GCA_017353185.1", "taxid": 2817060, "species_taxid": 2817060, "relation_to_type": "type", "validated": true, "ani": 76.4557, "matched_fragments": 342, "total_fragments": 2263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma fluviale", "strain": "strain=DSM 29961", "accession": "GCA_900230225.1", "taxid": 1597977, "species_taxid": 1597977, "relation_to_type": "type", "validated": true, "ani": 76.4264, "matched_fragments": 236, "total_fragments": 2263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma aureum", "strain": "strain=BT328", "accession": "GCA_011604685.1", "taxid": 2692134, "species_taxid": 2692134, "relation_to_type": "type", "validated": true, "ani": 76.323, "matched_fragments": 165, "total_fragments": 2263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma endbachense", "strain": "strain=I-24", "accession": "GCA_010233585.1", "taxid": 2666025, "species_taxid": 2666025, "relation_to_type": "type", "validated": true, "ani": 76.2675, "matched_fragments": 175, "total_fragments": 2263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma luteum", "strain": "strain=DSM 19990", "accession": "GCA_000374065.1", "taxid": 431553, "species_taxid": 431553, "relation_to_type": "type", "validated": true, "ani": 76.2349, "matched_fragments": 212, "total_fragments": 2263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fibrisoma limi", "strain": "strain=BUZ 3", "accession": "GCA_000296815.2", "taxid": 663275, "species_taxid": 663275, "relation_to_type": "type", "validated": true, "ani": 76.1704, "matched_fragments": 249, "total_fragments": 2263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma spitsbergense", "strain": "strain=DSM 19989", "accession": "GCA_000374085.1", "taxid": 431554, "species_taxid": 431554, "relation_to_type": "type", "validated": true, "ani": 76.129, "matched_fragments": 210, "total_fragments": 2263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma panaciterrae", "strain": "strain=DSM 21099", "accession": "GCA_000374025.1", "taxid": 496058, "species_taxid": 496058, "relation_to_type": "type", "validated": true, "ani": 76.1032, "matched_fragments": 176, "total_fragments": 2263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Larkinella humicola", "strain": "strain=MA1", "accession": "GCA_008727875.1", "taxid": 2607654, "species_taxid": 2607654, "relation_to_type": "type", "validated": true, "ani": 76.0087, "matched_fragments": 204, "total_fragments": 2263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma profusum", "strain": "strain=BT702", "accession": "GCA_014699005.1", "taxid": 2771354, "species_taxid": 2771354, "relation_to_type": "type", "validated": true, "ani": 75.9735, "matched_fragments": 199, "total_fragments": 2263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter armeniacus", "strain": "strain=BT189", "accession": "GCA_014699055.1", "taxid": 2771358, "species_taxid": 2771358, "relation_to_type": "type", "validated": true, "ani": 75.6259, "matched_fragments": 76, "total_fragments": 2263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter actinosclerus", "strain": "strain=DSM 15310", "accession": "GCA_900111515.1", "taxid": 82805, "species_taxid": 82805, "relation_to_type": "type", "validated": true, "ani": 75.605, "matched_fragments": 55, "total_fragments": 2263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter piscis", "strain": "strain=NST-14", "accession": "GCA_018760735.1", "taxid": 2839984, "species_taxid": 2839984, "relation_to_type": "type", "validated": true, "ani": 75.558, "matched_fragments": 60, "total_fragments": 2263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter rigui", "strain": "strain=KCTC 12533", "accession": "GCA_003944715.1", "taxid": 334424, "species_taxid": 334424, "relation_to_type": "type", "validated": true, "ani": 75.4949, "matched_fragments": 54, "total_fragments": 2263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter terricola", "strain": "strain=3F2", "accession": "GCA_017921975.2", "taxid": 2819236, "species_taxid": 2819236, "relation_to_type": "type", "validated": true, "ani": 75.313, "matched_fragments": 72, "total_fragments": 2263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter daecheongensis", "strain": "strain=DSM 21074", "accession": "GCA_900141805.1", "taxid": 496053, "species_taxid": 496053, "relation_to_type": "type", "validated": true, "ani": 75.1388, "matched_fragments": 61, "total_fragments": 2263, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_004292855.1", "gtdb_species": "s__Rudanella sp004292855", "ani": 98.3074, "matched_fragments": 1867, "total_fragments": 2263, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Rudanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.31", 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