{ "type": "genome", "identifier": "GCA_013299115.1", "organism": "Cytophagales bacterium", "title": "Cytophagales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Auckland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013299115.1", "bioproject": "PRJNA555798", "biosample": "SAMN12754368", "wgs_master": "JAAFKA000000000.1", "refseq_category": "na", "taxid": "2053541", "species_taxid": "2053541", "organism_name": "Cytophagales bacterium", "infraspecific_name": "", "isolate": "bin6.concoct.b1b2b5.025", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/08", "asm_name": "ASM1329911v1", "submitter": "University of Auckland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/299/115/GCA_013299115.1_ASM1329911v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-08", "dateModified": "2020-06-08", "datePublished": "2020-06-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Cytophagales bacterium" ], "sample_taxid": [ "2053541" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Zealand: Wai-iti river, Nelson" ], "sample_host_location_id": [], "data_size": "1.515 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5499092", "Number of Sequences": "74", 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004292795.1", "gtdb_species": "s__RDXI01 sp004292795", "ani": 75.205, "matched_fragments": 52, "total_fragments": 1799, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Microscillaceae;g__RDXI01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013298075.1", "gtdb_species": "s__RDXZ01 sp013298075", "ani": 75.165, "matched_fragments": 99, "total_fragments": 1799, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Microscillaceae;g__RDXZ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, 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"o__Cytophagales", "f__Thermoflexibacteraceae", "g__JAAFKA01", "s__JAAFKA01 sp013299115", "Bacteria", "Bacteroidota", "Bacteroidia", "Cytophagales", "Thermoflexibacteraceae", "JAAFKA01", "JAAFKA01", "sp013299115" ], "_meo": [ { "id": "MEO_0000116", "label": "biofilm" }, { "id": "MEO_0000082", "label": "river" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }