{ "type": "genome", "identifier": "GCA_013316365.1", "organism": "Muribaculaceae bacterium", "title": "Muribaculaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Vienna", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013316365.1", "bioproject": "PRJNA586865", "biosample": "SAMN13256049", "wgs_master": "WSMY00000000.1", "refseq_category": "na", "taxid": "2498093", "species_taxid": "2498093", "organism_name": "Muribaculaceae bacterium", "infraspecific_name": "", "isolate": "RACS_036", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/10", "asm_name": "ASM1331636v1", "submitter": "University of Vienna", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/316/365/GCA_013316365.1_ASM1331636v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-10", "dateModified": "2020-06-10", "datePublished": "2020-06-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Muribaculaceae bacterium" ], "sample_taxid": [ "2498093" ], "sample_host_organism": [ "Mus musculus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.458 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 37.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1578478", "Number of Sequences": "190", "Longest Sequences (bp)": "50525", "N50 (bp)": "12535", "Gap Ratio (%)": "0.018245", "GCcontent (%)": "50.3", "Number of CDSs": "1135", "Average Protein Length": "379.1", "Coding Ratio (%)": "81.8", "Number of rRNAs": "0", "Number of tRNAs": "4", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Duncaniella freteri", "strain": "strain=TLL-A3", "accession": "GCA_004766125.1", "taxid": 2530391, "species_taxid": 2530391, "relation_to_type": "type", "validated": true, "ani": 98.949, "matched_fragments": 402, "total_fragments": 424, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Duncaniella dubosii", "strain": "strain=H5", "accession": "GCA_004803915.1", "taxid": 2518971, "species_taxid": 2518971, "relation_to_type": "type", "validated": true, "ani": 76.8754, "matched_fragments": 69, "total_fragments": 424, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 37.5, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004766125.1", "gtdb_species": "s__Duncaniella freteri", "ani": 98.949, "matched_fragments": 402, "total_fragments": 424, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Duncaniella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.17", "min_intra_species_ani": "98.83", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.95", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCA_910588795.1", "gtdb_species": "s__Duncaniella sp910588795", "ani": 82.4456, "matched_fragments": 315, "total_fragments": 424, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Duncaniella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.60", "min_intra_species_ani": "96.60", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_910584825.1", "gtdb_species": "s__Duncaniella sp910584825", "ani": 78.9018, "matched_fragments": 146, "total_fragments": 424, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Duncaniella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910589485.1", "gtdb_species": "s__Duncaniella sp910589485", "ani": 78.5997, "matched_fragments": 163, "total_fragments": 424, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Duncaniella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003762875.1", "gtdb_species": "s__Duncaniella sp001689575", "ani": 78.4786, "matched_fragments": 138, "total_fragments": 424, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Duncaniella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.25", "min_intra_species_ani": "96.19", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.80", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_014802015.1", "gtdb_species": "s__Duncaniella sp014802015", "ani": 78.4004, "matched_fragments": 111, "total_fragments": 424, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Duncaniella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910587165.1", "gtdb_species": "s__Duncaniella sp910587165", "ani": 77.5881, "matched_fragments": 77, "total_fragments": 424, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Duncaniella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910576785.1", "gtdb_species": "s__Duncaniella sp910576785", "ani": 77.3521, "matched_fragments": 82, "total_fragments": 424, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Duncaniella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014802105.1", "gtdb_species": "s__Duncaniella sp014802105", "ani": 77.2829, "matched_fragments": 70, "total_fragments": 424, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Duncaniella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.28", "min_intra_species_ani": "98.28", "mean_intra_species_af": "0.74", "min_intra_species_af": "0.74", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_001701225.1", "gtdb_species": "s__Duncaniella sp001701225", "ani": 76.8135, "matched_fragments": 65, "total_fragments": 424, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Duncaniella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.71", "min_intra_species_ani": "98.22", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.86", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": 3306764.5, "gc_content": 50.1, "coding_genes": 2641.0, "rRNA16S_genes": null, "tRNA_genes": 54.0, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Bacteroidales", "f__Muribaculaceae", "g__Duncaniella", "s__Duncaniella freteri" ], "_genome_taxon": [ "Muribaculaceae", "bacterium", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Bacteroidales", "f__Muribaculaceae", "g__Duncaniella", "s__Duncaniella freteri", "Bacteria", "Bacteroidota", "Bacteroidia", "Bacteroidales", "Muribaculaceae", "Duncaniella", "Duncaniella", "freteri" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }