{ "type": "genome", "identifier": "GCA_013330365.1", "organism": "Thermococcaceae archaeon", "title": "Thermococcaceae archaeon", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013330365.1", "bioproject": "PRJNA593905", "biosample": "SAMN13193010", "wgs_master": "DUII00000000.1", "refseq_category": "na", "taxid": "2666349", "species_taxid": "2666349", "organism_name": "Thermococcaceae archaeon", "infraspecific_name": "", "isolate": "UBA12520", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/11", "asm_name": "ASM1333036v1", "submitter": "The University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/330/365/GCA_013330365.1_ASM1333036v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-11", "dateModified": "2020-06-11", "datePublished": "2020-06-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Thermococcaceae archaeon" ], "sample_taxid": [ "2666349" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Alaska, North Slope, Ivishak formation" ], "sample_host_location_id": [], "data_size": "0.524 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 77.78, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1854649", "Number of Sequences": "181", "Longest Sequences (bp)": "76140", "N50 (bp)": "14975", "Gap Ratio (%)": "1.639933", "GCcontent (%)": "43.2", "Number of CDSs": "1788", "Average Protein Length": "275.9", "Coding Ratio (%)": "79.8", "Number of rRNAs": "0", "Number of tRNAs": "37", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thermococcus bergensis", "strain": "strain=T7324", "accession": "GCA_020386975.1", "taxid": 2689387, "species_taxid": 2689387, "relation_to_type": "type", "validated": true, "ani": 94.969, "matched_fragments": 419, "total_fragments": 531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermococcus litoralis", "strain": "strain=DSM 5473", "accession": "GCA_000246985.3", "taxid": 2265, "species_taxid": 2265, "relation_to_type": "type", "validated": true, "ani": 90.5057, "matched_fragments": 424, "total_fragments": 531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermococcus 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"gtdb_result": [ { "accession": "GCF_000430485.1", "gtdb_species": "s__Thermococcus_A sp000430485", "ani": 95.7991, "matched_fragments": 441, "total_fragments": 531, "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.03", "min_intra_species_ani": "95.46", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.83", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_000246985.2", "gtdb_species": "s__Thermococcus_A litoralis", "ani": 90.4832, "matched_fragments": 425, "total_fragments": 531, "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.93", "min_intra_species_ani": "96.93", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, 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