{ "type": "genome", "identifier": "GCA_013333475.2", "organism": "Prevotella sp.", "title": "Prevotella sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Marine Biological Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013333475.2", "bioproject": "PRJNA625082", "biosample": "SAMN14602658", "wgs_master": "JABCOU000000000.2", "refseq_category": "na", "taxid": "59823", "species_taxid": "59823", "organism_name": "Prevotella sp.", "infraspecific_name": "", "isolate": "T-A-F_MAG_00002", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/11", "asm_name": "ASM1333347v2", "submitter": "Marine Biological Laboratory", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/475/GCA_013333475.2_ASM1333347v2", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-11", "dateModified": "2020-08-11", "datePublished": "2020-08-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Prevotella sp." ], "sample_taxid": [ "59823" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Massachusetts" ], "sample_host_location_id": [], "data_size": "0.721 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2512890", "Number of Sequences": "80", "Longest Sequences (bp)": "144083", "N50 (bp)": "55795", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.9", "Number of CDSs": "1896", "Average Protein Length": "366.5", "Coding Ratio (%)": "83.0", "Number of rRNAs": "0", "Number of tRNAs": "44", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella scopos", "strain": "strain=W2052", "accession": "GCA_018127785.1", "taxid": 589437, "species_taxid": 589437, "relation_to_type": "type", "validated": true, "ani": 77.8411, "matched_fragments": 63, "total_fragments": 798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella scopos", "strain": "strain=W2052", "accession": "GCA_001683355.1", "taxid": 589437, "species_taxid": 589437, "relation_to_type": "type", "validated": true, "ani": 77.8219, "matched_fragments": 64, "total_fragments": 798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella melaninogenica", "strain": "strain=ATCC 25845", "accession": "GCA_000144405.1", "taxid": 28132, "species_taxid": 28132, "relation_to_type": "suspected-type", "validated": true, "ani": 77.7616, "matched_fragments": 55, "total_fragments": 798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella scopos", "strain": "strain=DSM 22613", "accession": "GCA_900129535.1", "taxid": 589437, "species_taxid": 589437, "relation_to_type": "type", "validated": true, "ani": 77.7484, "matched_fragments": 66, "total_fragments": 798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella melaninogenica", "strain": "strain=FDAARGOS_1566", "accession": "GCA_020735785.1", "taxid": 28132, "species_taxid": 28132, "relation_to_type": "suspected-type", "validated": true, "ani": 77.6129, "matched_fragments": 55, "total_fragments": 798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hallella faecis", "strain": "strain=CLA-AA-H145", "accession": "GCA_018789675.1", "taxid": 2841596, "species_taxid": 2841596, "relation_to_type": "type", "validated": true, "ani": 77.6035, "matched_fragments": 56, "total_fragments": 798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella albensis", "strain": "strain=DSM 11370", "accession": "GCA_000426565.1", "taxid": 77768, "species_taxid": 77768, "relation_to_type": "type", "validated": true, "ani": 77.5816, "matched_fragments": 54, "total_fragments": 798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella albensis", "strain": "strain=JCM 12258", "accession": "GCA_000613525.1", "taxid": 77768, "species_taxid": 77768, "relation_to_type": "type", "validated": true, "ani": 77.5188, "matched_fragments": 56, "total_fragments": 798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella oris", "strain": "strain=NCTC13071", "accession": "GCA_900637655.1", "taxid": 28135, "species_taxid": 28135, "relation_to_type": "type", "validated": true, "ani": 77.3641, "matched_fragments": 63, "total_fragments": 798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella oris", "strain": "strain=DSM 18711", "accession": "GCA_000377685.1", "taxid": 28135, "species_taxid": 28135, "relation_to_type": "type", "validated": true, "ani": 77.3118, "matched_fragments": 61, "total_fragments": 798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella histicola", "strain": "strain=JCM 15637", "accession": "GCA_000613925.1", "taxid": 470565, "species_taxid": 470565, "relation_to_type": "type", "validated": true, "ani": 77.2405, "matched_fragments": 50, "total_fragments": 798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella disiens", "strain": "strain=NCTC11157", "accession": "GCA_900454955.1", "taxid": 28130, "species_taxid": 28130, "relation_to_type": "type", "validated": true, "ani": 77.2155, "matched_fragments": 51, "total_fragments": 798, "ani_threshold": 95, "status": "below_threshold" } ], 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"status": "-" }, { "accession": "GCF_018128065.1", "gtdb_species": "s__Prevotella sp000467895", "ani": 77.844, "matched_fragments": 62, "total_fragments": 798, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.71", "min_intra_species_ani": "96.42", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.83", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_905236755.1", "gtdb_species": "s__Prevotella sp905236755", "ani": 77.6414, "matched_fragments": 63, "total_fragments": 798, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.83", "min_intra_species_ani": "97.34", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.68", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_018789675.1", 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